package: Coliphage Phi-X174 Complete Genome

In c5sire/BSgenome.phix174.NCBI.NC001422: Coliphage Phi-X174 Complete Genome

Description

Escherichia virus phiX174. Viruses; Microviridae; Bullavirinae; Sinsheimervirus.

Note

This BSgenome data package was made from the following source data files:

FASTA https://www.ncbi.nlm.nih.gov/nuccore/NC_001422.1?report=fasta&log$=seqview
  

See ?BSgenomeForge and the BSgenomeForge vignette (vignette("BSgenomeForge")) in the BSgenome software package for how to make a BSgenome data package.

Author(s)

Reinhard Simon

See Also

• BSgenome objects and the available.genomes function in the BSgenome software package.

• DNAString objects in the Biostrings package.

• The BSgenomeForge vignette (vignette("BSgenomeForge")) in the BSgenome software package for how to make a BSgenome data package.

Examples

BSgenome.phix174.NCBI.NC001422
genome <- BSgenome.phix174.NCBI.NC001422
head(seqlengths(genome))


## ---------------------------------------------------------------------
## Genome-wide motif searching
## ---------------------------------------------------------------------
## See the GenomeSearching vignette in the BSgenome software
## package for some examples of genome-wide motif searching using
## Biostrings and the BSgenome data packages:
if (interactive())
    vignette("GenomeSearching", package="BSgenome")

c5sire/BSgenome.phix174.NCBI.NC001422 documentation built on Feb. 28, 2020, 12:22 a.m.