Man pages for cailab-tamu/scTypeGSEA
Single Cell Type Gene Set Enrichment Analysis
| assignCellType | Assign cell type. |
| atac2rna | Convert a peak matrix to a gene activity matrix |
| doClustering | Cluster Determination |
| doGSEA | Runs preranked gene set enrichment analysis. |
| getFC | Get fold-changes. |
| GSEA_list | Cell type gene expression markers from GSEA data base |
| labelCelltype | Add cell type to Seurat object. |
| PanglaoDB_list | Cell type gene expression markers from GSEA data base |
| pbmc_small_atac | A small example version of the PBMC ATAC dataset |
| scqc | Single cell quality control and basic data pre-process. |
| small_pbmc_rna | A small example version of the PBMC dataset |
| TAIR_list | The reference genome for Arabidopsis. |
