Files in calico/romic
R for High-Dimensional Omic Data

.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/lint.yaml
.github/workflows/pkgdown.yaml
.gitignore
CRAN-SUBMISSION
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md R/app_flow.R R/app_heatmap.R R/app_pcs.R R/data.R R/data_classes.R R/design.R R/dim_reduction.R R/export.R R/filters.R R/hclust.R R/module_filter.R R/module_ggbiv.R R/module_ggplot.R R/module_gguniv.R R/module_lasso.R R/module_organize.R R/module_plotsaver.R R/module_sort.R R/mutates.R R/romic-package.R R/utils.R README.md
_pkgdown.yml
assets/romic_art/5186664.jpeg
assets/romic_art/57948e66574349821198e2f1ae0b054c.jpeg
assets/romic_art/hairballs.ai
assets/romic_art/meta.ai
assets/romic_art/missing.ai
assets/romic_art/r_text.ai
assets/romic_art/romic.indd
assets/romic_art/romic.png
assets/romic_art/s-l1600.jpeg
assets/romic_summary.ai
assets/romic_summary.png
cran-comments.md
data/brauer_2008.rda
data/brauer_2008_tidy.rda
data/brauer_2008_triple.rda
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/_config.yml
docs/articles/index.html
docs/articles/romic.html
docs/articles/romic_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/romic_files/anchor-sections-1.0/anchor-sections.css
docs/articles/romic_files/anchor-sections-1.0/anchor-sections.js
docs/articles/romic_files/figure-html/bivariate_plot-1.png
docs/articles/romic_files/figure-html/eda-1.png
docs/articles/romic_files/figure-html/static_heatmap-1.png
docs/articles/romic_files/figure-html/univariate_plot-1.png
docs/articles/romic_files/header-attrs-2.7/header-attrs.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/Rplot003.png
docs/reference/add_pca_loadings.html
docs/reference/add_pcs.html
docs/reference/app_flow.html
docs/reference/app_heatmap.html
docs/reference/app_pcs.html
docs/reference/app_scatter.html
docs/reference/bivariate_plot-1.png
docs/reference/bivariate_plot-2.png
docs/reference/bivariate_plot-3.png
docs/reference/bivariate_plot.html
docs/reference/brauer_2008.html
docs/reference/center_tomic.html
docs/reference/check_tidy_omic.html
docs/reference/check_tomic.html
docs/reference/check_triple_omic.html
docs/reference/convert_wide_to_tidy_omic.html
docs/reference/convert_wide_to_triple_omic.html
docs/reference/create_tidy_omic.html
docs/reference/create_triple_omic.html
docs/reference/downsample_heatmap.html
docs/reference/export_tomic_as_tidy.html
docs/reference/export_tomic_as_triple.html
docs/reference/export_tomic_as_wide.html
docs/reference/filterInput.html
docs/reference/filterServer.html
docs/reference/filter_tomic.html
docs/reference/format_names_for_plotting.html
docs/reference/get_design_tbl.html
docs/reference/get_tomic_table.html
docs/reference/ggBivOutput.html
docs/reference/ggBivServer.html
docs/reference/ggUnivOutput.html
docs/reference/ggUnivServer.html
docs/reference/ggplotOutput.html
docs/reference/ggplotServer.html
docs/reference/hclust_order.html
docs/reference/impute_missing_values.html
docs/reference/index.html
docs/reference/infer_tomic_table_type.html
docs/reference/interactive_heatmap.html
docs/reference/lassoInput.html
docs/reference/lassoServer.html
docs/reference/organizeInput.html
docs/reference/organizeServer.html
docs/reference/plot_bivariate-1.png
docs/reference/plot_bivariate-2.png
docs/reference/plot_bivariate-3.png
docs/reference/plot_bivariate.html
docs/reference/plot_heatmap-1.png
docs/reference/plot_heatmap.html
docs/reference/plot_univariate-1.png
docs/reference/plot_univariate-2.png
docs/reference/plot_univariate.html
docs/reference/plotsaverInput.html
docs/reference/plotsaverServer.html
docs/reference/prepare_example_datasets.html
docs/reference/read_wide_file_to_triple_omic.html
docs/reference/reconcile_triple_omic.html
docs/reference/remove_missing_values.html
docs/reference/romic-package.html
docs/reference/romic.html
docs/reference/scatter.html
docs/reference/scatter_plot-1.png
docs/reference/scatter_plot.html
docs/reference/shiny_filter_test.html
docs/reference/shiny_ggbiv_test.html
docs/reference/shiny_ggplot_test.html
docs/reference/shiny_gguniv_test.html
docs/reference/shiny_lasso_test.html
docs/reference/shiny_lasso_test_reactval.html
docs/reference/shiny_organize_test.html
docs/reference/shiny_plotsaver_test.html
docs/reference/shiny_sort_test.html
docs/reference/sortInput.html
docs/reference/sortServer.html
docs/reference/sort_tomic.html
docs/reference/sort_triple_arrange.html
docs/reference/sort_triple_hclust.html
docs/reference/tidy_to_triple.html
docs/reference/tomic_sort_status.html
docs/reference/tomic_to.html
docs/reference/triple_to_tidy.html
docs/reference/try_brushedPoints.html
docs/reference/univariate_plot-1.png
docs/reference/univariate_plot-2.png
docs/reference/univariate_plot.html
docs/reference/update_tidy_omic.html
docs/reference/update_tomic.html
docs/reference/var_partial_match.html
docs/sitemap.xml
man/add_pcs.Rd man/app_flow.Rd man/app_heatmap.Rd man/app_pcs.Rd man/brauer_2008.Rd man/calculate_sample_mahalanobis_distances.Rd man/center_tomic.Rd man/check_design.Rd man/check_tidy_omic.Rd man/check_tomic.Rd man/check_triple_omic.Rd man/convert_wide_to_tidy_omic.Rd man/create_tidy_omic.Rd man/create_triple_omic.Rd man/downsample_heatmap.Rd man/export_tomic_as_tidy.Rd man/export_tomic_as_triple.Rd man/export_tomic_as_wide.Rd man/filterInput.Rd man/filterServer.Rd man/filter_tomic.Rd man/format_names_for_plotting.Rd man/get_design_tbl.Rd man/get_tomic_table.Rd man/ggBivOutput.Rd man/ggBivServer.Rd man/ggUnivOutput.Rd man/ggUnivServer.Rd man/ggplotOutput.Rd man/ggplotServer.Rd man/hclust_order.Rd man/impute_missing_values.Rd man/infer_tomic_table_type.Rd man/lassoInput.Rd man/lassoServer.Rd man/organizeInput.Rd man/organizeServer.Rd man/plot_bivariate.Rd man/plot_heatmap.Rd man/plot_missing_values.Rd man/plot_univariate.Rd man/plotsaverInput.Rd man/plotsaverServer.Rd man/prepare_example_datasets.Rd man/reconcile_triple_omic.Rd man/reform_tidy_omic.Rd man/remove_missing_values.Rd man/romic-package.Rd man/shiny_filter_test.Rd man/shiny_ggbiv_test.Rd man/shiny_ggplot_test.Rd man/shiny_gguniv_test.Rd man/shiny_lasso_test.Rd man/shiny_lasso_test_reactval.Rd man/shiny_organize_test.Rd man/shiny_plotsaver_test.Rd man/shiny_sort_test.Rd man/sortInput.Rd man/sortServer.Rd man/sort_tomic.Rd man/sort_triple_arrange.Rd man/sort_triple_hclust.Rd man/tidy_to_triple.Rd man/tomic_sort_status.Rd man/tomic_to.Rd man/tomic_to_matrix.Rd man/triple_to_tidy.Rd man/try_brushedPoints.Rd man/update_sample_factors.Rd man/update_tidy_omic.Rd man/update_tomic.Rd man/var_partial_match.Rd
romic.Rproj
tests/testthat.R tests/testthat/_snaps/data_classes.md tests/testthat/_snaps/design.md tests/testthat/_snaps/dim_reduction.md tests/testthat/_snaps/filters.md tests/testthat/_snaps/mutates.md tests/testthat/helper.R tests/testthat/test-app_heatmap.R tests/testthat/test-conversion.R tests/testthat/test-data_classes.R tests/testthat/test-design.R tests/testthat/test-dim_reduction.R tests/testthat/test-export.R tests/testthat/test-filters.R tests/testthat/test-hclust.R tests/testthat/test-module_ggbiv.R tests/testthat/test-module_gguniv.R tests/testthat/test-mutates.R tests/testthat/test-utils.R vignettes/romic.Rmd
calico/romic documentation built on Sept. 27, 2024, 7:16 p.m.