listToMatrix: Convert Adjancency list to adjancency matrix

In califano-lab/OncoSig: What the package does (short line)

Description

Convert Adjancency list (as a dataframe) to adjancency matrix. The first column will become the columns the second column the rows, and the third column the weights of the edges.

Usage

listToMatrix(df)

Arguments

df

Value

returns a adjacency matrix as a matrix object

Examples

Network_location="Input_data_files/LUAD/original_network.txt"
Network=read.delim(Network_location,header=F)
Network$V1=as.character(Network$V1)
Network$V2=as.character(Network$V2)
Network$V3=as.numeric(Network$V3)
Network=as.matrix(Network)
Gold_Standard_location="Input_data_files/LUAD/10_oncogene_pathways/KRAS/total.txt"
Gold_Standard=read.delim(Gold_Standard_location,header=F)
Gold_Standard$V1=as.character(Gold_Standard$V1)

Network[,3]=as.numeric(Network[,3])
Network_matrix=listToMatrix(Network)

califano-lab/OncoSig documentation built on Oct. 2, 2020, 3:24 p.m.