R/matrixConvert.R

In camel315/otuSummary: Summarizing OTU table regarding the composition, abundance and beta diversity of abundant and rare biospheres

Defines functions matrixConvert

Documented in matrixConvert

matrixConvert <- function(triMatrix, colname = c("sp1","sp2","dist")){
  m <- as.matrix(triMatrix)
  m2 <- reshape2::melt(m)[reshape2::melt(upper.tri(m))$value,]
  names(m2) <- colname
  invisible(m2)
}