Files in camilleroquencourt/ptairMS
Pre-processing PTR-TOF-MS Data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
Makefile
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/Raw_Methods.R
R/RcppExports.R
R/SetMethods.R
R/ShinnyApp.R
R/alignment.R
R/annotation.R
R/app.R
R/package.R
R/peak_detection.R
R/ptairMS-package.R
R/read_data.R
R/scorePlotly.R
R/writeEset.R
README.md
inst/extdata/reference_tables/HBDB.csv
inst/extdata/reference_tables/HBDB_20240320.csv
inst/extdata/reference_tables/HBDB_20240322.csv
inst/extdata/reference_tables/atomic_isotopes.tsv
inst/extdata/reference_tables/atomic_weights.tsv
inst/extdata/reference_tables/calib_table.tsv
inst/extdata/reference_tables/manualAdd.tsv
inst/extdata/reference_tables/vocDB.tsv
inst/script/documentation.R
man/LocalMaximaSG.Rd
man/OptimalWindowsSG.Rd
man/PeakList.Rd
man/RunShinnyApp.Rd
man/TransmissionCurve.Rd
man/aggregate.Rd
man/align.Rd
man/alignSamples.Rd
man/annotation.Rd
man/calibration.Rd
man/calibrationFun.Rd
man/changeTimeLimits.Rd
man/convert_to_mzML.Rd
man/createPtrSet.Rd
man/cumulative_fit_function.Rd
man/deadTimeCorr.Rd
man/defineKnots.Rd
man/detectPeak.Rd
man/determinePeakShape.Rd
man/exportSampleMetada.Rd
man/extractEIC.Rd
man/fit_averagePeak.Rd
man/fit_averagePeak_function.Rd
man/formula2mass.Rd
man/getDirectory.Rd
man/getFileNames.Rd
man/getPeakList.Rd
man/getSampleMetadata.Rd
man/importSampleMetadata.Rd
man/impute.Rd
man/imputeMat.Rd
man/initializeFit.Rd
man/makeSubGroup.Rd
man/plot.Rd
man/plotCalib.Rd
man/plotFeatures.Rd
man/plotPeakShape.Rd
man/plotRaw.Rd
man/plotTIC.Rd
man/ptairMS-package.Rd
man/ptrRaw.Rd
man/ptrSet.Rd
man/readRaw.Rd
man/resetSampleMetadata.Rd
man/rmPeakList.Rd
man/setSampleMetadata.Rd
man/show-ptrRaw-method.Rd
man/show-ptrSet-method.Rd
man/snipBase.Rd
man/timeLimits.Rd
man/updatePtrSet.Rd
man/width.Rd
man/writeEset.Rd
src/RcppExports.cpp
src/align.cpp
src/findEqualGreaterM.cpp
tests/testthat.R
tests/testthat/test-alignment.R
tests/testthat/test-annotation.R
tests/testthat/test-calibration.R
tests/testthat/test-delimitTime.R
tests/testthat/test-detect_peak.R
tests/testthat/test-read.R
vignettes/.build.timestamp
vignettes/figures/permanent/ptairMS_workflow.JPG
vignettes/ptairMS.R
vignettes/ptairMS.Rmd
vignettes/ptairMS.bib
vignettes/ptairMS_files/figure-html/calibration-1.png
vignettes/ptairMS_files/figure-html/plot-1.png
vignettes/ptairMS_files/figure-html/plotCalib-1.png
vignettes/ptairMS_files/figure-html/plotFeatures-1.png
vignettes/ptairMS_files/figure-html/plotRaw_ptrSet-1.png
vignettes/ptairMS_files/figure-html/plotTIC1-1.png
vignettes/ptairMS_files/figure-html/timeLimits1-1.png
vignettes/ptairMS_files/figure-html/timeLimits1-2.png
