autoconvert: Automatically convert genes to a given format
In camlab-bioml/inferorg: Infer organism and identifier type given a list of genes
Description
Usage
Arguments
Value
Examples
Description
Infers both the organism and genome ID format before converting
to the desired format
Usage
1
autoconvert(gene_vec, to = c("symbol", "ensgene", "entrez"))
Arguments
gene_vec
Vector of input gene IDs
to
ID format to convert gene IDs to
Value
A vector of the same size as gene_vec with the mapped IDs. Any
IDs that are unable to be mapped are converted to NA.
Examples
1
2
autoconvert(c("Tapbp", "B2m"), to='ensgene')
autoconvert(c(3105, 3106), to='symbol')
camlab-bioml/inferorg documentation built on Feb. 14, 2022, 12:44 a.m.
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Description Usage Arguments Value Examples
Description
Infers both the organism and genome ID format before converting to the desired format
Usage
1 | autoconvert(gene_vec, to = c("symbol", "ensgene", "entrez"))
|
Arguments
gene_vec |
Vector of input gene IDs |
to |
ID format to convert gene IDs to |
Value
A vector of the same size as gene_vec with the mapped IDs. Any
IDs that are unable to be mapped are converted to NA.
Examples
1 2 | autoconvert(c("Tapbp", "B2m"), to='ensgene')
autoconvert(c(3105, 3106), to='symbol')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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