Files in camposfa/plhdbR
Tools for working with the Primate Life History Database
.Rbuildignore
.gitignore
Births_Histogram.pdf
DESCRIPTION
NAMESPACE
R/.DS_Store
R/find-errors.R
R/plhdbR.R
R/plotting-functions.R
R/prep.R
R/read-tables.R
R/vital-rates.R
README.Rmd
README.md
analysis_scripts/autocorr.R
analysis_scripts/birth-seasonality.R
analysis_scripts/climate-analysis-plots.R
analysis_scripts/climate-analysis.R
analysis_scripts/climate-variability.R
analysis_scripts/climwin_extra.R
analysis_scripts/corr_plots.R
analysis_scripts/ggcorr.R
analysis_scripts/individual_years.R
analysis_scripts/plot_vital_rates.R
analysis_scripts/sifaka_plot.R
analysis_scripts/sliding_window_analysis.R
analysis_scripts/ssr-rain.R
analysis_scripts/study_duration_summary.R
analysis_scripts/variable-correlation-plot.R
analysis_scripts/variable_maps.R
gombe_yearly.csv
man/.Rapp.history
man/age_first_rep.Rd
man/cubroot_trans.Rd
man/find_bio_errors.Rd
man/find_fert_errors.Rd
man/find_first_born_errors.Rd
man/find_mom_id_errors.Rd
man/get_age_class.Rd
man/grapes-ni-grapes.Rd
man/load_plhdb_packages.Rd
man/make_survivorship_trials.Rd
man/plhdbR-package.Rd
man/plhdbR.Rd
man/pseudocensus_ages.Rd
man/read_bio_table.Rd
man/read_fert_table.Rd
man/sqrt_sign_trans.Rd
man/stage_specific_fertility.Rd
man/stage_specific_survival.Rd
plhdb.jpg
plhdbR.Rproj
plots/Indices.pdf
plots/Old/.DS_Store
plots/Old/GPCC_Precipitation.pdf
plots/Old/GPCC_Precipitation_Anomalies.pdf
plots/Old/TAVG.pdf
plots/Old/TAVG_Anomalies.pdf
plots/Old/Temperature_anomaly.pdf
plots/Old/Temperature_means.pdf
plots/Old/rain_trends_stl_18_month_smooth.pdf
plots/Old/rain_trends_stl_varying_smooth.pdf
plots/Old/stage_specific_fertility.pdf
plots/Old/stage_specific_survival.pdf
plots/Rain_anomaly.pdf
plots/Rain_selected.pdf
plots/Rain_source.pdf
plots/SPEI_Drought_Index_01.pdf
plots/SPEI_Drought_Index_03.pdf
plots/SPEI_Drought_Index_06.pdf
plots/TAVG_actual.pdf
plots/TMAX_actual.pdf
plots/TMAX_anomaly.pdf
plots/TMAX_detrended.pdf
plots/TMIN_actual.pdf
plots/TMIN_anomaly.pdf
plots/TMIN_detrended.pdf
plots/ccf_plots/.DS_Store
plots/ccf_plots/rain_anomalies/.DS_Store
plots/combined_plots/FigS10_gorilla_combined.pdf
plots/combined_plots/FigS4_sifaka_combined.pdf
plots/combined_plots/FigS5_capuchin_combined.pdf
plots/combined_plots/FigS6_muriqui_combined.pdf
plots/combined_plots/FigS7_bluemonkey_combined.pdf
plots/combined_plots/FigS8_baboon_combined.pdf
plots/combined_plots/FigS9_chimpanzee_combined.pdf
plots/index_anomaly_correlations/.DS_Store
plots/index_anomaly_correlations/all_rain.pdf
plots/index_anomaly_correlations/all_tavg.pdf
plots/index_anomaly_correlations/all_tavg_detrended.pdf
plots/index_anomaly_correlations/all_tmax.pdf
plots/index_anomaly_correlations/all_tmax_detrended.pdf
plots/index_anomaly_correlations/all_tmin.pdf
plots/index_anomaly_correlations/all_tmin_detrended.pdf
plots/index_anomaly_correlations/sig_rain.pdf
plots/index_anomaly_correlations/sig_tavg.pdf
plots/index_anomaly_correlations/sig_tavg_detrended.pdf
plots/index_anomaly_correlations/sig_tmax.pdf
plots/index_anomaly_correlations/sig_tmax_detrended.pdf
plots/index_anomaly_correlations/sig_tmin.pdf
plots/index_anomaly_correlations/sig_tmin_detrended.pdf
plots/models/.DS_Store
plots/models/Fertility_AllLagScenarios_AIC.pdf
plots/models/Fertility_AllLagScenarios_Deviance.pdf
plots/models/Fertility_BestLagScenarios_AIC.pdf
plots/models/Fertility_BestLagScenarios_Deviance.pdf
plots/models/Fertility_Coefficients_1_Muriqui.pdf
plots/models/Fertility_Coefficients_2_Baboon.pdf
plots/models/Fertility_Coefficients_3_Blue Monkey.pdf
plots/models/Fertility_Coefficients_4_Chimpanzee.pdf
plots/models/Fertility_Coefficients_5_Gorilla.pdf
plots/models/Fertility_Coefficients_6_Sifaka.pdf
plots/models/Fertility_Coefficients_7_Capuchin.pdf
plots/models/Survival_AllLagScenarios_AIC.pdf
plots/models/Survival_AllLagScenarios_Deviance.pdf
plots/models/Survival_BestLagScenarios_AIC.pdf
plots/models/Survival_BestLagScenarios_Deviance.pdf
plots/models/Survival_Coefficients_1_Muriqui_adult.pdf
plots/models/Survival_Coefficients_1_Muriqui_juvenile.pdf
plots/models/Survival_Coefficients_1_Muriqui_newborn.pdf
plots/models/Survival_Coefficients_2_Baboon_adult.pdf
plots/models/Survival_Coefficients_2_Baboon_juvenile.pdf
plots/models/Survival_Coefficients_2_Baboon_newborn.pdf
plots/models/Survival_Coefficients_3_Blue Monkey_adult.pdf
plots/models/Survival_Coefficients_3_Blue Monkey_juvenile.pdf
plots/models/Survival_Coefficients_3_Blue Monkey_newborn.pdf
plots/models/Survival_Coefficients_4_Chimpanzee_adult.pdf
plots/models/Survival_Coefficients_4_Chimpanzee_juvenile.pdf
plots/models/Survival_Coefficients_4_Chimpanzee_newborn.pdf
plots/models/Survival_Coefficients_5_Gorilla_adult.pdf
plots/models/Survival_Coefficients_5_Gorilla_juvenile.pdf
plots/models/Survival_Coefficients_5_Gorilla_newborn.pdf
plots/models/Survival_Coefficients_6_Sifaka_adult.pdf
plots/models/Survival_Coefficients_6_Sifaka_juvenile.pdf
plots/models/Survival_Coefficients_6_Sifaka_newborn.pdf
plots/models/Survival_Coefficients_7_Capuchin_adult.pdf
plots/models/Survival_Coefficients_7_Capuchin_juvenile.pdf
plots/models/Survival_Coefficients_7_Capuchin_newborn.pdf
plots/phase_anomaly_plots/.DS_Store
plots/phase_anomaly_plots/rain_anomalies/.DS_Store
plots/phase_anomaly_plots/rain_anomalies/1_rppn-fma.pdf
plots/phase_anomaly_plots/rain_anomalies/2_amboseli.pdf
plots/phase_anomaly_plots/rain_anomalies/3_kakamega.pdf
plots/phase_anomaly_plots/rain_anomalies/4_gombe.pdf
plots/phase_anomaly_plots/rain_anomalies/5_karisoke.pdf
plots/phase_anomaly_plots/rain_anomalies/6_beza.pdf
plots/phase_anomaly_plots/rain_anomalies/7_ssr.pdf
plots/phase_anomaly_plots/tavg_anomalies/1_rppn-fma.pdf
plots/phase_anomaly_plots/tavg_anomalies/2_amboseli.pdf
plots/phase_anomaly_plots/tavg_anomalies/3_kakamega.pdf
plots/phase_anomaly_plots/tavg_anomalies/4_gombe.pdf
plots/phase_anomaly_plots/tavg_anomalies/5_karisoke.pdf
plots/phase_anomaly_plots/tavg_anomalies/6_beza.pdf
plots/phase_anomaly_plots/tavg_anomalies/7_ssr.pdf
plots/phase_anomaly_plots/tmax_anomalies/1_rppn-fma.pdf
plots/phase_anomaly_plots/tmax_anomalies/2_amboseli.pdf
plots/phase_anomaly_plots/tmax_anomalies/3_kakamega.pdf
plots/phase_anomaly_plots/tmax_anomalies/4_gombe.pdf
plots/phase_anomaly_plots/tmax_anomalies/5_karisoke.pdf
plots/phase_anomaly_plots/tmax_anomalies/6_beza.pdf
plots/phase_anomaly_plots/tmax_anomalies/7_ssr.pdf
plots/phase_anomaly_plots/tmin_anomalies/1_rppn-fma.pdf
plots/phase_anomaly_plots/tmin_anomalies/2_amboseli.pdf
plots/phase_anomaly_plots/tmin_anomalies/3_kakamega.pdf
plots/phase_anomaly_plots/tmin_anomalies/4_gombe.pdf
plots/phase_anomaly_plots/tmin_anomalies/5_karisoke.pdf
plots/phase_anomaly_plots/tmin_anomalies/6_beza.pdf
plots/phase_anomaly_plots/tmin_anomalies/7_ssr.pdf
plots/source_comparison_plots/.DS_Store
plots/source_comparison_plots/GPCP Satellite VS GPCC.pdf
plots/source_comparison_plots/Rain Gauge VS GPCC.pdf
plots/source_comparison_plots/Rain Gauge VS GPCP Satellite.pdf
plots/source_comparison_plots/Rain Gauge VS TRMM Satellite.pdf
plots/source_comparison_plots/TRMM Satellite VS GPCC.pdf
plots/source_comparison_plots/TRMM Satellite VS GPCP Satellite.pdf
plots/stl_example_tmax_ssr.pdf
plots/var_cor_plots/FigS4_Muriqui_var_cor.pdf
plots/vital_plots/FigS11_survival_gorilla.pdf
vignettes/Climate.Rmd
vignettes/Climate.md
vignettes/ErrorChecking.Rmd
vignettes/ErrorChecking.md
vignettes/VitalRates.Rmd
vignettes/VitalRates.md
vignettes/Vitals-unnamed-chunk-5-1.png
vignettes/Vitals-unnamed-chunk-6-1.png
