Files in camposfa/plhdbR
Tools for working with the Primate Life History Database

.Rbuildignore
.gitignore
Births_Histogram.pdf
DESCRIPTION
NAMESPACE
R/.DS_Store
R/find-errors.R R/plhdbR.R R/plotting-functions.R R/prep.R R/read-tables.R R/vital-rates.R README.Rmd README.md analysis_scripts/autocorr.R analysis_scripts/birth-seasonality.R analysis_scripts/climate-analysis-plots.R analysis_scripts/climate-analysis.R analysis_scripts/climate-variability.R analysis_scripts/climwin_extra.R analysis_scripts/corr_plots.R analysis_scripts/ggcorr.R analysis_scripts/individual_years.R analysis_scripts/plot_vital_rates.R analysis_scripts/sifaka_plot.R analysis_scripts/sliding_window_analysis.R analysis_scripts/ssr-rain.R analysis_scripts/study_duration_summary.R analysis_scripts/variable-correlation-plot.R analysis_scripts/variable_maps.R
gombe_yearly.csv
man/.Rapp.history
man/age_first_rep.Rd man/cubroot_trans.Rd man/find_bio_errors.Rd man/find_fert_errors.Rd man/find_first_born_errors.Rd man/find_mom_id_errors.Rd man/get_age_class.Rd man/grapes-ni-grapes.Rd man/load_plhdb_packages.Rd man/make_survivorship_trials.Rd man/plhdbR-package.Rd man/plhdbR.Rd man/pseudocensus_ages.Rd man/read_bio_table.Rd man/read_fert_table.Rd man/sqrt_sign_trans.Rd man/stage_specific_fertility.Rd man/stage_specific_survival.Rd
plhdb.jpg
plhdbR.Rproj
plots/Indices.pdf
plots/Old/.DS_Store
plots/Old/GPCC_Precipitation.pdf plots/Old/GPCC_Precipitation_Anomalies.pdf plots/Old/TAVG.pdf plots/Old/TAVG_Anomalies.pdf plots/Old/Temperature_anomaly.pdf plots/Old/Temperature_means.pdf plots/Old/rain_trends_stl_18_month_smooth.pdf plots/Old/rain_trends_stl_varying_smooth.pdf plots/Old/stage_specific_fertility.pdf plots/Old/stage_specific_survival.pdf plots/Rain_anomaly.pdf plots/Rain_selected.pdf plots/Rain_source.pdf plots/SPEI_Drought_Index_01.pdf plots/SPEI_Drought_Index_03.pdf plots/SPEI_Drought_Index_06.pdf plots/TAVG_actual.pdf plots/TMAX_actual.pdf plots/TMAX_anomaly.pdf plots/TMAX_detrended.pdf plots/TMIN_actual.pdf plots/TMIN_anomaly.pdf plots/TMIN_detrended.pdf
plots/ccf_plots/.DS_Store
plots/ccf_plots/rain_anomalies/.DS_Store
plots/combined_plots/FigS10_gorilla_combined.pdf plots/combined_plots/FigS4_sifaka_combined.pdf plots/combined_plots/FigS5_capuchin_combined.pdf plots/combined_plots/FigS6_muriqui_combined.pdf plots/combined_plots/FigS7_bluemonkey_combined.pdf plots/combined_plots/FigS8_baboon_combined.pdf plots/combined_plots/FigS9_chimpanzee_combined.pdf
plots/index_anomaly_correlations/.DS_Store
plots/index_anomaly_correlations/all_rain.pdf plots/index_anomaly_correlations/all_tavg.pdf plots/index_anomaly_correlations/all_tavg_detrended.pdf plots/index_anomaly_correlations/all_tmax.pdf plots/index_anomaly_correlations/all_tmax_detrended.pdf plots/index_anomaly_correlations/all_tmin.pdf plots/index_anomaly_correlations/all_tmin_detrended.pdf plots/index_anomaly_correlations/sig_rain.pdf plots/index_anomaly_correlations/sig_tavg.pdf plots/index_anomaly_correlations/sig_tavg_detrended.pdf plots/index_anomaly_correlations/sig_tmax.pdf plots/index_anomaly_correlations/sig_tmax_detrended.pdf plots/index_anomaly_correlations/sig_tmin.pdf plots/index_anomaly_correlations/sig_tmin_detrended.pdf
plots/models/.DS_Store
plots/models/Fertility_AllLagScenarios_AIC.pdf plots/models/Fertility_AllLagScenarios_Deviance.pdf plots/models/Fertility_BestLagScenarios_AIC.pdf plots/models/Fertility_BestLagScenarios_Deviance.pdf plots/models/Fertility_Coefficients_1_Muriqui.pdf plots/models/Fertility_Coefficients_2_Baboon.pdf plots/models/Fertility_Coefficients_3_Blue Monkey.pdf plots/models/Fertility_Coefficients_4_Chimpanzee.pdf plots/models/Fertility_Coefficients_5_Gorilla.pdf plots/models/Fertility_Coefficients_6_Sifaka.pdf plots/models/Fertility_Coefficients_7_Capuchin.pdf plots/models/Survival_AllLagScenarios_AIC.pdf plots/models/Survival_AllLagScenarios_Deviance.pdf plots/models/Survival_BestLagScenarios_AIC.pdf plots/models/Survival_BestLagScenarios_Deviance.pdf plots/models/Survival_Coefficients_1_Muriqui_adult.pdf plots/models/Survival_Coefficients_1_Muriqui_juvenile.pdf plots/models/Survival_Coefficients_1_Muriqui_newborn.pdf plots/models/Survival_Coefficients_2_Baboon_adult.pdf plots/models/Survival_Coefficients_2_Baboon_juvenile.pdf plots/models/Survival_Coefficients_2_Baboon_newborn.pdf plots/models/Survival_Coefficients_3_Blue Monkey_adult.pdf plots/models/Survival_Coefficients_3_Blue Monkey_juvenile.pdf plots/models/Survival_Coefficients_3_Blue Monkey_newborn.pdf plots/models/Survival_Coefficients_4_Chimpanzee_adult.pdf plots/models/Survival_Coefficients_4_Chimpanzee_juvenile.pdf plots/models/Survival_Coefficients_4_Chimpanzee_newborn.pdf plots/models/Survival_Coefficients_5_Gorilla_adult.pdf plots/models/Survival_Coefficients_5_Gorilla_juvenile.pdf plots/models/Survival_Coefficients_5_Gorilla_newborn.pdf plots/models/Survival_Coefficients_6_Sifaka_adult.pdf plots/models/Survival_Coefficients_6_Sifaka_juvenile.pdf plots/models/Survival_Coefficients_6_Sifaka_newborn.pdf plots/models/Survival_Coefficients_7_Capuchin_adult.pdf plots/models/Survival_Coefficients_7_Capuchin_juvenile.pdf plots/models/Survival_Coefficients_7_Capuchin_newborn.pdf
plots/phase_anomaly_plots/.DS_Store
plots/phase_anomaly_plots/rain_anomalies/.DS_Store
plots/phase_anomaly_plots/rain_anomalies/1_rppn-fma.pdf plots/phase_anomaly_plots/rain_anomalies/2_amboseli.pdf plots/phase_anomaly_plots/rain_anomalies/3_kakamega.pdf plots/phase_anomaly_plots/rain_anomalies/4_gombe.pdf plots/phase_anomaly_plots/rain_anomalies/5_karisoke.pdf plots/phase_anomaly_plots/rain_anomalies/6_beza.pdf plots/phase_anomaly_plots/rain_anomalies/7_ssr.pdf plots/phase_anomaly_plots/tavg_anomalies/1_rppn-fma.pdf plots/phase_anomaly_plots/tavg_anomalies/2_amboseli.pdf plots/phase_anomaly_plots/tavg_anomalies/3_kakamega.pdf plots/phase_anomaly_plots/tavg_anomalies/4_gombe.pdf plots/phase_anomaly_plots/tavg_anomalies/5_karisoke.pdf plots/phase_anomaly_plots/tavg_anomalies/6_beza.pdf plots/phase_anomaly_plots/tavg_anomalies/7_ssr.pdf plots/phase_anomaly_plots/tmax_anomalies/1_rppn-fma.pdf plots/phase_anomaly_plots/tmax_anomalies/2_amboseli.pdf plots/phase_anomaly_plots/tmax_anomalies/3_kakamega.pdf plots/phase_anomaly_plots/tmax_anomalies/4_gombe.pdf plots/phase_anomaly_plots/tmax_anomalies/5_karisoke.pdf plots/phase_anomaly_plots/tmax_anomalies/6_beza.pdf plots/phase_anomaly_plots/tmax_anomalies/7_ssr.pdf plots/phase_anomaly_plots/tmin_anomalies/1_rppn-fma.pdf plots/phase_anomaly_plots/tmin_anomalies/2_amboseli.pdf plots/phase_anomaly_plots/tmin_anomalies/3_kakamega.pdf plots/phase_anomaly_plots/tmin_anomalies/4_gombe.pdf plots/phase_anomaly_plots/tmin_anomalies/5_karisoke.pdf plots/phase_anomaly_plots/tmin_anomalies/6_beza.pdf plots/phase_anomaly_plots/tmin_anomalies/7_ssr.pdf
plots/source_comparison_plots/.DS_Store
plots/source_comparison_plots/GPCP Satellite VS GPCC.pdf plots/source_comparison_plots/Rain Gauge VS GPCC.pdf plots/source_comparison_plots/Rain Gauge VS GPCP Satellite.pdf plots/source_comparison_plots/Rain Gauge VS TRMM Satellite.pdf plots/source_comparison_plots/TRMM Satellite VS GPCC.pdf plots/source_comparison_plots/TRMM Satellite VS GPCP Satellite.pdf plots/stl_example_tmax_ssr.pdf plots/var_cor_plots/FigS4_Muriqui_var_cor.pdf plots/vital_plots/FigS11_survival_gorilla.pdf vignettes/Climate.Rmd vignettes/Climate.md vignettes/ErrorChecking.Rmd vignettes/ErrorChecking.md vignettes/VitalRates.Rmd vignettes/VitalRates.md
vignettes/Vitals-unnamed-chunk-5-1.png
vignettes/Vitals-unnamed-chunk-6-1.png
camposfa/plhdbR documentation built on Sept. 13, 2017, 9:27 p.m.