Files in cannin/rcellminerData
rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

.BBSoptions

.DS_Store

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS

README.md

data/drugData.RData

data/molData.RData

inst/.DS_Store

inst/CITATION

inst/extdata/.DS_Store

inst/extdata/.Rapp.history

inst/extdata/CellLineToOncoTree.txt

inst/extdata/CellMinerNci60LineTab.Rdata

inst/extdata/H3K27ac.gene_promoter_signal.tsv

inst/extdata/H3K27ac.gene_to_peak_assignments.tsv

inst/extdata/H3K4me3.gene_promoter_signal.tsv

inst/extdata/H3K4me3.gene_to_peak_assignments.tsv

inst/extdata/NCI60-NEscores-49genes-60samples-04142020.txt

inst/extdata/NCI60_cellsurface_329_log2.txt

inst/extdata/NCI60_druginfo4_22257_Sandbox_08142020.txt

inst/extdata/NCI60_repstress_exp_scores.txt

inst/extdata/NCI60_scores_SVGA_APM_60samples_9012genes_filteredIQR.txt

inst/extdata/Protein_SWATH_int2.4.2_05192020.txt

inst/extdata/RNAseq.geneMay14.Rdata

inst/extdata/Remove_1030_add_1075_Drug.R

inst/extdata/SWATH_uniprot_id.csv

inst/extdata/TNBC_cellminerCDB_curated.txt

inst/extdata/Update_APM_descp_add_RS_score.R inst/extdata/Update_MDA_desc_SWATH.R inst/extdata/Update_drug_annot.R inst/extdata/Update_mda_desc_add_NE_score.R

inst/extdata/act60.txt

inst/extdata/act60meta_complete.txt

inst/extdata/add_1030new_DrugData.R inst/extdata/add_APM_score.R inst/extdata/add_Metadata_02_2018.R inst/extdata/add_epigenetics.R inst/extdata/add_repstress.R inst/extdata/add_rnaseq_composite_06_2018.R

inst/extdata/bmn-673-meta-ready.txt

inst/extdata/bmn-673-meta-repAct.txt

inst/extdata/bmn-673-repAct.txt

inst/extdata/bmn-673.txt

inst/extdata/cellminer_1_6/DTP_NCI60.txt

inst/extdata/cellminer_1_6/GENE_QA_AVERAGES.txt

inst/extdata/cellminer_1_6/GENE_QA_AVERAGES.xls

inst/extdata/cellminer_1_6/GENE_ZSCORES.txt

inst/extdata/cellminer_1_6/GI50.public.int1_6.Rdata

inst/extdata/cellminer_1_6/NCI60_DNA__Combined_aCGH_gene_summary.txt

inst/extdata/cellminer_1_6/NCI60_DNA__Exome_Seq_none.txt

inst/extdata/cellminer_1_6/NCI60_RNA__Agilent_Human_microRNA_(V2)_GeneSpringGX.txt

inst/extdata/cellminer_1_6/exome_gene_probeIds_mapping.txt

inst/extdata/cellminer_1_6/nci60_Protein__Lysate_Array_log2.txt

inst/extdata/cellminer_1_6/nci60_cellline_metadata.xls

inst/extdata/cellminer_2_0/CELLMINER_CELL_LINE_METADATA.txt

inst/extdata/cellminer_2_0/CELLMINER_CELL_LINE_METADATA.xls

inst/extdata/cellminer_2_0/DNA__Combined_aCGH_Gene_summary.txt

inst/extdata/cellminer_2_0/DNA__Combined_aCGH_Gene_summary.xls

inst/extdata/cellminer_2_0/DNA__Exome_Seq_Protein_function_affecting.txt

inst/extdata/cellminer_2_0/DNA__Exome_Seq_Protein_function_affecting.xls

inst/extdata/cellminer_2_0/DNA__Exome_Seq_none.txt

inst/extdata/cellminer_2_0/DNA__Illumina_450K_methylation_Gene_average.txt

inst/extdata/cellminer_2_0/DNA__Illumina_450K_methylation_Gene_average.xls

inst/extdata/cellminer_2_0/DTP_NCI60_CORRECTED_NSC_SET.txt

inst/extdata/cellminer_2_0/DTP_NCI60_EXPS_USED_FOR_ZSCORE_ACT.txt

inst/extdata/cellminer_2_0/DTP_NCI60_EXPS_USED_FOR_ZSCORE_ACT.xls

inst/extdata/cellminer_2_0/DTP_NCI60_RAW.txt

inst/extdata/cellminer_2_0/DTP_NCI60_RAW.xlsx

inst/extdata/cellminer_2_0/DTP_NCI60_ZSCORE.txt

inst/extdata/cellminer_2_0/DTP_NCI60_ZSCORE.xls

inst/extdata/cellminer_2_0/Protein__Lysate_Array_log2.txt

inst/extdata/cellminer_2_0/Protein__Lysate_Array_log2.xls

inst/extdata/cellminer_2_0/RNA__5_Platform_Gene_Transcript_Average_z_scores.txt

inst/extdata/cellminer_2_0/RNA__5_Platform_Gene_Transcript_Average_z_scores.xls

inst/extdata/cellminer_2_0/RNA__5_Platform_Gene_Transcript_Averaged_intensities.txt

inst/extdata/cellminer_2_0/RNA__5_Platform_Gene_Transcript_Averaged_intensities.xls

inst/extdata/cellminer_2_0/RNA__Agilent_Human_microRNA_(V2)_GeneSpringGX.txt

inst/extdata/cellminer_2_0/RNA__Agilent_Human_microRNA_(V2)_GeneSpringGX.xls

inst/extdata/drug_1075_public_v2_4_2.csv

inst/extdata/drug_activity_zscore_for_1075drugs.csv

inst/extdata/drug_goodexperiments_for_1075drugs.csv

inst/extdata/extra-metadata-nci60.txt

inst/extdata/list1030drugs.csv

inst/extdata/make_60new_DrugData.R inst/extdata/make_DrugData_bmn673.R inst/extdata/make_rcellminerdata_1_6.R inst/extdata/make_rcellminerdata_2_0.R

inst/extdata/nci60_RepStress.csv

inst/extdata/phenodata_70.txt

inst/extdata/phenoinfo_70_correct.txt

inst/extdata/publicNSC_Oct2019.txt

inst/extdata/public_drug_Rep_act_v2.5_correct.txt

inst/extdata/public_drug_Rep_act_v2.7_correct.txt

inst/extdata/public_drug_Rep_act_v2_10.txt

inst/extdata/public_drug_Rep_act_v2_11.txt

inst/extdata/public_drug_Rep_act_v2_12.txt

inst/extdata/public_drug_Rep_act_v2_8_1.txt

inst/extdata/public_drug_Rep_act_v2_9.txt

inst/extdata/public_drug_Rep_info_v2.5_correct.txt

inst/extdata/public_drug_Rep_info_v2.7_correct.txt

inst/extdata/public_drug_Rep_info_v2_10.txt

inst/extdata/public_drug_Rep_info_v2_11.txt

inst/extdata/public_drug_Rep_info_v2_12.txt

inst/extdata/public_drug_Rep_info_v2_8_1.txt

inst/extdata/public_drug_Rep_info_v2_9.txt

inst/extdata/public_drug_act_v2.5_correct.txt

inst/extdata/public_drug_act_v2.7_correct.txt

inst/extdata/public_drug_act_v2_10.txt

inst/extdata/public_drug_act_v2_11.txt

inst/extdata/public_drug_act_v2_12.txt

inst/extdata/public_drug_act_v2_8_1.txt

inst/extdata/public_drug_act_v2_9.txt

inst/extdata/public_drug_info_v2.5_correct.txt

inst/extdata/public_drug_info_v2.7_correct.txt

inst/extdata/public_drug_info_v2_10.txt

inst/extdata/public_drug_info_v2_11.txt

inst/extdata/public_drug_info_v2_12.txt

inst/extdata/public_drug_info_v2_8_1.txt

inst/extdata/public_drug_info_v2_9.txt

inst/extdata/remove_one_DrugData.R

inst/extdata/rep.act60.txt

inst/extdata/rep.act60meta.txt

inst/extdata/updated_metadata_042018.txt

man/drugData.Rd man/molData.Rd

rcellminerData.Rproj

tests/testthat.R tests/testthat/test_rcellminerData.R vignettes/rcellminerDataUsage.Rmd

cannin/rcellminerData documentation built on April 18, 2024, 4:29 a.m.

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cannin/rcellminerData
rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

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rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

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cannin/rcellminerData rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

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cannin/rcellminerData
rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

Files in cannin/rcellminerData
rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines