caravagn/mtree: mtree - Mutation Tree

This package implements mutation trees that can be built from multi-region binary data of cancer somatic mutations, copy number alterations, etc. This type of models can be used to study the evolutionary trajectories of a tumour from targeted bulk sequencing data, or from any multi-sample data that cannot be used for the computation of higher-resolution models like clone trees. This package provides several functions to generate, plot and summarise mutation trees, and is part of the `evoverse`,a package that gathers multiple R packages to implement Cancer Evolution analyses.

install.packages("remotes")
remotes::install_github("caravagn/mtree")