plot_binary_clusters: Plot binary clusters data (tile).

In caravagn/mtree: mtree - Mutation Tree

Description

This function creates a ggplot-style heatmap of the input CCF cluster of each clone in the data. The heatmap is annotated for the drivers status of each clone (with/ without driver). The CCF values are used to colour the heatmap ('NA' values are in light gray).

Usage

plot_binary_clusters(x, ...)

Arguments

x	An mtree tree.
...	Extra parameters, not used.
patient	A patient id.

Value

A ggplot plot.

Examples

data(mtree_input)

x = mtrees(
mtree_input$binary_clusters, 
mtree_input$drivers,
mtree_input$samples,
mtree_input$patient,
mtree_input$sspace.cutoff,
mtree_input$n.sampling,
mtree_input$store.max
)

plot_binary_clusters(x[[1]])

caravagn/mtree documentation built on Sept. 17, 2020, 1:13 a.m.