plot_icon: Plot the information transfe among clones in icon format...

In caravagn/mtree: mtree - Mutation Tree

Description

The information transfer of a tree is the set of orderings associated to the internal annotated driver events.

This function plots the clones with drivers (so their orderings) following a topological sort of the node of the corresponding clone tree, and in tiny icon format. Some graohics changes with respect ot a standard plot.

Usage

plot_icon(x, node_palette = colorRampPalette(RColorBrewer::brewer.pal(n =
  9, "Set1")), ...)

Arguments

x	An mtree tree.
node_palette	A function that can return, for an input number, a number of colours.
...	Other parameters, not used in this case.

Value

A ggplot object for the plot.

Examples

data(mtree_input)

x = mtrees(
mtree_input$binary_clusters, 
mtree_input$drivers,
mtree_input$samples,
mtree_input$patient,
mtree_input$sspace.cutoff,
mtree_input$n.sampling,
mtree_input$store.max
)

plot_icon(x[[1]])

caravagn/mtree documentation built on Sept. 17, 2020, 1:13 a.m.