hcols_to_bracket_fmt: Convert Helmsan subtype format to bracket subtype format
In carjed/musigtools: musigtools
Description
Usage
Arguments
Value
Examples
Description
Used in deconstructSigs, maftools, and MutationalPatterns
Usage
1
hcols_to_bracket_fmt(subtypes)
Arguments
subtypes
A 96-element vector of mutation subtypes formatted as "C_A.TCG"
Value
A 96-element vector of mutation subtypes formatted as "T[C>A]G"
Examples
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## Not run:
mu_counts <- read.table("/path/to/subtype_count_matrix.txt", header=T, stringsAsFactors=F)
subtypes_in <- colnames(mu_counts)[-1]
deconstructSigs_cols <- hcols_to_bracket_fmt(subtypes_in)
## End(Not run)
carjed/musigtools documentation built on May 12, 2019, 10:32 p.m.
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Description Usage Arguments Value Examples
Description
Used in deconstructSigs, maftools, and MutationalPatterns
Usage
1 | hcols_to_bracket_fmt(subtypes)
|
Arguments
subtypes |
A 96-element vector of mutation subtypes formatted as "C_A.TCG" |
Value
A 96-element vector of mutation subtypes formatted as "T[C>A]G"
Examples
1 2 3 4 5 6 | ## Not run:
mu_counts <- read.table("/path/to/subtype_count_matrix.txt", header=T, stringsAsFactors=F)
subtypes_in <- colnames(mu_counts)[-1]
deconstructSigs_cols <- hcols_to_bracket_fmt(subtypes_in)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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