nomadCheckLogTransform: Check whether logging the data is necessary. y and x are the...
In carlmurie/NOMAD: Normalization of Mass Spectrometry Data
Description
Usage
Arguments
Value
Examples
Description
Check whether logging the data is necessary. y and x are the same inputs
as nomadNormalization
Check whether logging the data is necessary
Usage
1
nomadCheckLogTransform(y, x, meth = "TukeyBW", rawTrim = 1)
Arguments
y
vector dependant variable (vector of real numbers)
x
matrix independent or explanatory variables (matrix). x must include columns
for Peptide, Protein, iTRAQ, and Run
meth
string manner of calculating center of peptide abundances per protein
- choices: TukeyBW, Median, or Mean
rawTrim
real Quantile used to reduce scale for plotting raw data. Will plot
raw means up to the specified quantile (default=1)
Value
None
Examples
1
2
data(BalfPeptides)
nomadCheckLogTransform(y=BalfPeptides$Abundance, x=BalfPeptides)
carlmurie/NOMAD documentation built on May 14, 2019, 11:12 a.m.
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Description Usage Arguments Value Examples
Description
Check whether logging the data is necessary. y and x are the same inputs as nomadNormalization Check whether logging the data is necessary
Usage
1 | nomadCheckLogTransform(y, x, meth = "TukeyBW", rawTrim = 1)
|
Arguments
y |
|
x |
|
meth |
|
rawTrim |
|
Value
None
Examples
1 2 | data(BalfPeptides)
nomadCheckLogTransform(y=BalfPeptides$Abundance, x=BalfPeptides)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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