createDEGGraphs: Produce a set of descriptive graphs for DEG limma results...
In carlmurie/RNASeqUtilities: Helper functions for RNASeq analysis and presentation
Description
Usage
Arguments
Value
View source: R/RNASeqUtilities.R
Description
Produce a histogram of p-values, volcano plot of logFC vs -log10 p-values and
a histogram of FDRs. Input the return value from topTable (limma) with column names
unchanged.
Usage
1
createDEGGraphs(dat, title = NULL, fdrCut = 0.2)
Arguments
dat
data.frame Return data.frame from topTable function in limma
title
character string for title of graph.
fdrCut
Significance cut-off value for FDR. Genes who pass cut-off will be
shown in red in volcano plot.
Value
list with three ggplot2 elements - p-value histogram, volcano plot, and FDR
histogram.
carlmurie/RNASeqUtilities documentation built on Sept. 1, 2019, 11:54 p.m.
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Description Usage Arguments Value
View source: R/RNASeqUtilities.R
Description
Produce a histogram of p-values, volcano plot of logFC vs -log10 p-values and a histogram of FDRs. Input the return value from topTable (limma) with column names unchanged.
Usage
1 | createDEGGraphs(dat, title = NULL, fdrCut = 0.2)
|
Arguments
dat |
data.frame Return data.frame from topTable function in limma |
title |
character string for title of graph. |
fdrCut |
Significance cut-off value for FDR. Genes who pass cut-off will be shown in red in volcano plot. |
Value
list with three ggplot2 elements - p-value histogram, volcano plot, and FDR histogram.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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