outputGSEA: Create markdown string showing gsea results.

In carlmurie/RNASeqUtilities: Helper functions for RNASeq analysis and presentation

Description

Create markdown string showing gsea results.

Usage

outputGSEA(gsea, doSlides = TRUE, onlySigs = TRUE, FDRCut = 0.2,
  header = "##")

Arguments

gsea	List of gsea results from runGSEA. Name of gsea element will be used as title
doSlides	Boolean: If TRUE then output markdown slides else produce standard markdown.
onlySigs	Boolean: if TRUE output only genesets that pass the 'FDRCut' threshold (output message if no significant gene sets) else output all genesets. Default is FALSE.
FDRCut	FDR threshold to use to determine significance. Default is 0.2.
header	Character string defining markdown header to ouput for each set of results. This is only used if doSlides=FALSE.

Value

Vector of markdown strings

carlmurie/RNASeqUtilities documentation built on Sept. 1, 2019, 11:54 p.m.