Man pages for carmencita/chic.data
ChIC package data
| chipSubset | ChIP-seq bam file stored as spp tag-list for a subset of... |
| classesDefList | List with definitions |
| compendium_db | Histone mark compendium |
| compendium_db_tf | Transcription factor compendium |
| compendium_profiles | Metagene profile data for chromatin marks |
| compendium_profiles_TF | Metagene profile data for transcription factors |
| dm3_chrom_info | dm3 chromosome information |
| dm3_refseq_genes_filtered_granges | Filtered RefSeq gene annotation as GRanges for dm3 |
| EM_Results | Example results from the qualityScores_EM() function based on... |
| hg19_chrom_info | hg19 chromosome information |
| hg19_refseq_genes_filtered_granges | Filtered RefSeq gene annotation as GRanges |
| hg38_chrom_info | hg38 chromosome information |
| hg38_refseq_genes_filtered_granges | Filtered RefSeq gene annotation as GRanges |
| inputSubset | ChIP-seq bam file stored as spp tag-list for a subset of... |
| mm10_chrom_info | mm10 chromosome information |
| mm10_refseq_genes_filtered_granges | Filtered RefSeq gene annotation as GRanges for mm10 |
| mm9_chrom_info | mm9 chromosome information |
| mm9_refseq_genes_filtered_granges | Filtered RefSeq gene annotation as GRanges for mm9 |
| rf_models | Random forest models for chromatin marks ChIP-seq experiment... |
