compendium_profiles_TF: Metagene profile data for transcription factors

Description Usage Format Details Source

Description

Compendium of averaged metagene profiles for the ChIC package. Contains averaged metagene profiles for following ChIP-seq datasets from ENCODE.

Usage

1

Format

A list of data frames with the coordinates of the metagene profile of the respective transcription factor.

x : genomic coordinates mean : the mean of the signal intensity in the compendium sd : the standard deviation of the signal intensity in the compendium q1..q5 : being the respective quantile of the value distribution sderr : standard error

Details

Source

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carmencita/chic.data documentation built on Feb. 13, 2020, 2:43 a.m.