carmonalab/STACAS: STACAS: Sub-Type Anchoring Correction for Alignment in Seurat

This package implements methods for determining anchors for Seurat alignment, used in pipelines for batch correction and integration of scRNA-seq datasets. In particular, STACAS is optimized for the integration of heterogenous datasets with only limited overlap between cell sub-types (e.g. TIL sets of CD8 from tumor with CD8/CD4 T cells from lymphnode), for which the default Seurat alignment methods would tend to over-correct biological differences.

Getting started

Package details

Maintainer
LicenseGPL-3
Version1.1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("carmonalab/STACAS")
carmonalab/STACAS documentation built on Feb. 9, 2021, 6:18 p.m.