R/cbmbtools.R

In cb-42/cbmbtools: R Functions for Facilitating Microbiome Analyses

#' cbmbtools: General purpose package containing functions and templates for microbiome analysis pipelines
#'
#' The cbmbtools package provides several categories of functions for data import, wrangling, and plotting. This workflow is primarily geared towards data resulting from processing via \href{https://www.mothur.org/}{mothur}.
#'
#'
#' @section data import:
#' \code{\link{load_shared}} and \code{\link{load_tax}} handle loading and basic processing of .shared and .cons.taxonomy files respectively.
#'
#'
#' @section data wrangling functions:
#' Some examples of data wrangling functions are \code{\link{agg_otus}}, \code{\link{join_tax}}, and \code{\link{paste_tax}}.
#'
#'
#' @section plot functions:
#' The plot functions currently include, \code{\link{plot_ra}}, \code{\link{plot_spider}}, and \code{\link{plot_many_rf_varimp}}.
#'
#' @docType package
#' @name cbmbtools
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