Files in cbg-ethz/knockout
Statistical Analysis of High-Throughput Genetic Perturbation Screens
.Rbuildignore
.gitattributes
.gitignore
.lintr
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/class_analysed.R
R/class_data.R
R/data.R
R/inference_diffuse.R
R/inference_diffuse_mrw.R
R/inference_lmm.R
R/inference_lmm_fdr.R
R/inference_lmm_locfdr.R
R/inference_lmm_model_data.R
R/methods_combine.R
R/methods_filter.R
R/methods_getters.R
R/methods_show.R
R/perturbatr-package.R
R/plot_data.R
R/plot_diffusion.R
R/plot_hm.R
R/util_as.R
R/util_effect_matrix.R
R/util_enums.R
R/util_functions.R
R/util_graph.R
R/util_sampler.R
README.md
appveyor.yml
code-of-conduct.md
data/rnaiscreen.rda
inst/NEWS
inst/extdata/graph_full.rds
inst/extdata/graph_small.rds
inst/figure/sticker.R
inst/figure/sticker.png
man/HMAnalysedPerturbationData-class.Rd
man/NetworkAnalysedPerturbationData-class.Rd
man/PerturbationData-class.Rd
man/bootstrap.Rd
man/dataSet-methods.Rd
man/diffuse-methods.Rd
man/filter-methods.Rd
man/geneEffects-methods.Rd
man/graph-methods.Rd
man/hm-methods.Rd
man/inference-methods.Rd
man/isBootstrapped-methods.Rd
man/modelFit-methods.Rd
man/nestedGeneEffects-methods.Rd
man/params-methods.Rd
man/perturbatr-package.Rd
man/plot.NetworkAnalysedPerturbationData.Rd
man/plot.PerturbationData.Rd
man/rbind.PerturbationData.Rd
man/rnaiscreen.Rd
man/setModelData-methods.Rd
perturbatr.Rproj
tests/testthat.R
tests/testthat/test_classes.R
tests/testthat/test_diffusion.R
tests/testthat/test_hm.R
tests/testthat/test_methods.R
tests/testthat/test_util.R
vignettes/perturbatr.Rmd
vignettes/perturbatr.bib
