metaboliteqc --- Quality controling metabolite data

Global functions | |
---|---|

byboxplot | Man page Source code |

bybyboxplot | Man page Source code |

columnwise | Man page Source code |

compare_cv_strategies | Source code |

compute_median_cv | Source code |

copy_NAs | Man page Source code |

correct_for_factor | Man page Source code |

count_NAs | Man page Source code |

count_below_percentile | Man page Source code |

count_measurements_per_run_day | Source code |

count_metabolites_per_sample | Source code |

count_metabolites_with_high_global_cv | Source code |

count_negative_and_zero_measurements | Source code |

count_outliers_by_pathway | Source code |

count_outliers_by_run_day | Source code |

count_samples_and_metabolites | Source code |

count_samples_per_run_day | Source code |

create_id_table | Source code |

cv | Source code |

draw_box | Man page Source code |

draw_boxplot | Man page Source code |

draw_outliers | Man page Source code |

draw_whiskers | Man page Source code |

each_metabolite | Man page Source code |

each_pathway | Man page Source code |

each_run_day | Man page Source code |

each_sample | Man page Source code |

extract_and_order_metabolites | Source code |

extract_and_order_samples | Source code |

extract_data_matrix | Source code |

find_cell_indices | Man page Source code |

find_header_names | Source code |

find_lines_to_skip | Source code |

find_outliers | Source code |

find_percent_samples_with_low_metabolites | Source code |

find_percentage_of_low_metabolites | Source code |

find_sample_type | Source code |

hist_NAs | Man page Source code |

is_in_lower_tail | Source code |

mark_outliers | Man page Source code |

plot_NAs_by_run_day | Source code |

plot_NAs_by_run_day_and_pathway | Source code |

plot_NAs_per_metabolite | Source code |

plot_NAs_per_metabolite_by_pathway | Source code |

plot_NAs_per_sample | Source code |

plot_measurements_by_run_day | Source code |

plot_measurements_by_run_day_and_pathway | Source code |

plot_percent_samples_with_low_metabolites | Source code |

plot_samples_with_low_median_metabolites | Man page Source code |

plot_samples_with_low_pathways | Source code |

read_as_matrix | Source code |

read_data | Source code |

replace_NAs_with_column_means | Man page Source code |

replace_NAs_with_row_means | Man page Source code |

same | Man page Source code |

save_NAs_per_metabolite | Source code |

save_NAs_per_sample | Source code |

scale_metabolites_to_median_one | Source code |

select_if | Man page Source code |

set_negative_and_zero_to_NA | Source code |

set_outliers_to_NA | Source code |

show_distribution_of_NAs_by_pathway | Source code |

summarize_NAs | Man page Source code |

use_ids_as_column_names | Source code |

write.delim | Man page Source code |

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