API for cbhelmholtz/metaboliteqc
metaboliteqc --- Quality controling metabolite data

Global functions
byboxplot Man page Source code
bybyboxplot Man page Source code
columnwise Man page Source code
compare_cv_strategies Source code
compute_median_cv Source code
copy_NAs Man page Source code
correct_for_factor Man page Source code
count_NAs Man page Source code
count_below_percentile Man page Source code
count_measurements_per_run_day Source code
count_metabolites_per_sample Source code
count_metabolites_with_high_global_cv Source code
count_negative_and_zero_measurements Source code
count_outliers_by_pathway Source code
count_outliers_by_run_day Source code
count_samples_and_metabolites Source code
count_samples_per_run_day Source code
create_id_table Source code
cv Source code
draw_box Man page Source code
draw_boxplot Man page Source code
draw_outliers Man page Source code
draw_whiskers Man page Source code
each_metabolite Man page Source code
each_pathway Man page Source code
each_run_day Man page Source code
each_sample Man page Source code
extract_and_order_metabolites Source code
extract_and_order_samples Source code
extract_data_matrix Source code
find_cell_indices Man page Source code
find_header_names Source code
find_lines_to_skip Source code
find_outliers Source code
find_percent_samples_with_low_metabolites Source code
find_percentage_of_low_metabolites Source code
find_sample_type Source code
hist_NAs Man page Source code
is_in_lower_tail Source code
mark_outliers Man page Source code
plot_NAs_by_run_day Source code
plot_NAs_by_run_day_and_pathway Source code
plot_NAs_per_metabolite Source code
plot_NAs_per_metabolite_by_pathway Source code
plot_NAs_per_sample Source code
plot_measurements_by_run_day Source code
plot_measurements_by_run_day_and_pathway Source code
plot_percent_samples_with_low_metabolites Source code
plot_samples_with_low_median_metabolites Man page Source code
plot_samples_with_low_pathways Source code
read_as_matrix Source code
read_data Source code
replace_NAs_with_column_means Man page Source code
replace_NAs_with_row_means Man page Source code
same Man page Source code
save_NAs_per_metabolite Source code
save_NAs_per_sample Source code
scale_metabolites_to_median_one Source code
select_if Man page Source code
set_negative_and_zero_to_NA Source code
set_outliers_to_NA Source code
show_distribution_of_NAs_by_pathway Source code
summarize_NAs Man page Source code
use_ids_as_column_names Source code
write.delim Man page Source code
cbhelmholtz/metaboliteqc documentation built on May 12, 2017, 12:05 a.m.