metaboliteqc --- Quality controling metabolite data

byboxplot | Draw boxplots for subsets of columns |

bybyboxplot | Draw boxplots for rectangular subsets of matrix |

columnwise | Apply a function columnwise to groups of rows |

copy_NAs | Copy NAs from one matrix to another |

correct_for_factor | Correct metabolite measurements for a factor |

count_below_percentile | Count number of groups with measurements below percentile per... |

count_NAs | Count number of NAs |

draw_box | Draw box for boxplot |

draw_boxplot | Draw boxplot |

draw_outliers | Draw outliers for boxplot |

draw_whiskers | Draw whiskers for boxplot |

each_metabolite | Apply function to every metabolite |

each_pathway | Apply function to every pathway |

each_run_day | Apply function to every run day |

each_sample | Apply function to every sample |

find_cell_indices | Find indices of cells that satisfy a predicate |

hist_NAs | Histogram of number of NAs |

mark_outliers | Mark outliers |

plot_samples_with_low_median_metabolites | Show how many samples have low measurements in how many... |

replace_NAs_with_column_means | Replace missing values with column/row means |

same | Check whether objects are identical |

select_if | Select rows/columns of a matrix using a predicate |

summarize_NAs | Find number of missing values and missingness rate |

write.delim | Save dataset as tab-delimited plain text file |

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