Man pages for cbhelmholtz/metaboliteqc
metaboliteqc --- Quality controling metabolite data
| byboxplot | Draw boxplots for subsets of columns |
| bybyboxplot | Draw boxplots for rectangular subsets of matrix |
| columnwise | Apply a function columnwise to groups of rows |
| copy_NAs | Copy NAs from one matrix to another |
| correct_for_factor | Correct metabolite measurements for a factor |
| count_below_percentile | Count number of groups with measurements below percentile per... |
| count_NAs | Count number of NAs |
| draw_box | Draw box for boxplot |
| draw_boxplot | Draw boxplot |
| draw_outliers | Draw outliers for boxplot |
| draw_whiskers | Draw whiskers for boxplot |
| each_metabolite | Apply function to every metabolite |
| each_pathway | Apply function to every pathway |
| each_run_day | Apply function to every run day |
| each_sample | Apply function to every sample |
| find_cell_indices | Find indices of cells that satisfy a predicate |
| hist_NAs | Histogram of number of NAs |
| mark_outliers | Mark outliers |
| plot_samples_with_low_median_metabolites | Show how many samples have low measurements in how many... |
| replace_NAs_with_column_means | Replace missing values with column/row means |
| same | Check whether objects are identical |
| select_if | Select rows/columns of a matrix using a predicate |
| summarize_NAs | Find number of missing values and missingness rate |
| write.delim | Save dataset as tab-delimited plain text file |
