Files in cbiagii/ceTF
Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis
.DS_Store
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/CeTF-class.R
R/CeTFdemo-data.R
R/CircosTargets.R
R/PCIT.R
R/RIF.R
R/RIFPlot.R
R/RIF_input-data.R
R/RcppExports.R
R/SmearPlot.R
R/TFs-data.R
R/bivar_awk.R
R/clustCoef.R
R/clustCoefPercentage.R
R/densityPlot.R
R/diffusion.R
R/enrichPlot.R
R/enrichdemo-data.R
R/expDiff.R
R/getEnrich.R
R/getGroupGO.R
R/globals.R
R/gtfToBed.R
R/heatPlot.R
R/histPlot.R
R/netConditionsPlot.R
R/netGOTFPlot.R
R/normExp.R
R/refGenes-data.R
R/runAnalysis.R
R/simCounts-data.R
R/simNorm-data.R
R/zzz.R
README.md
_config.yml
data/CeTFdemo.RData
data/RIF_input.RData
data/TFs.RData
data/enrichdemo.RData
data/refGenes.RData
data/simCounts.RData
data/simNorm.RData
inst/CITATION
man/CeTF-class.Rd
man/CeTFdemo.Rd
man/CircosTargets.Rd
man/InputData-methods.Rd
man/NetworkData-methods.Rd
man/OutputData-methods.Rd
man/PCIT.Rd
man/RIF.Rd
man/RIFPlot.Rd
man/RIF_input.Rd
man/SmearPlot.Rd
man/TFs.Rd
man/bivar.awk.Rd
man/clustCoef.Rd
man/clustCoefPercentage.Rd
man/densityPlot.Rd
man/diffusion.Rd
man/enrichPlot.Rd
man/enrichdemo.Rd
man/expDiff.Rd
man/getDE-methods.Rd
man/getData-methods.Rd
man/getEnrich.Rd
man/getGroupGO.Rd
man/gtfToBed.Rd
man/heatPlot.Rd
man/histPlot.Rd
man/netConditionsPlot.Rd
man/netGOTFPlot.Rd
man/normExp.Rd
man/pcitC.Rd
man/refGenes.Rd
man/runAnalysis.Rd
man/simCounts.Rd
man/simNorm.Rd
man/tolerance.Rd
src/PCIT.cpp
src/RcppExports.cpp
tests/testthat.R
tests/testthat/test_PCIT.R
tests/testthat/test_RIF.R
tests/testthat/test_RIFPlot.R
tests/testthat/test_SmearPlot.R
tests/testthat/test_bivar_awk.R
tests/testthat/test_clustCoef.R
tests/testthat/test_clustCoefPercentage.R
tests/testthat/test_densityPlot.R
tests/testthat/test_enrichPlot.R
tests/testthat/test_expDiff.R
tests/testthat/test_getEnrich.R
tests/testthat/test_getGroupGO.R
tests/testthat/test_heatPlot.R
tests/testthat/test_histPlot.R
tests/testthat/test_netConditionsPlot.R
tests/testthat/test_netGOTFPlot.R
tests/testthat/test_normExp.R
tests/testthat/test_runAnalysis.R
tests/testthat/test_tolerance.R
vignettes/CeTF.Rmd
vignettes/fig1.jpg
vignettes/fig2.png
vignettes/library.bib
vignettes/library.bib.bak
vignettes/logo.png
