Files in cbig/zonator
Utilities for Zonation Spatial Conservation Prioritization Software

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md R/AllClasses.R R/AllGenerics.R R/ZCurvesDataFrame-methods.R R/ZGroupCurvesDataFrame-methods.R R/comparison.R R/curves.R R/initialize-methods.R R/options.R R/plot.R R/ppa.R R/project.R R/read-input.R R/read-output-raster.R R/utilities.R R/write-input.R R/zonation.R R/zonator-internal.R R/zproject-methods.R R/zresults-methods.R R/zvariant-methods.R README.md
_pkgdown.yml
appveyor.yml
codecov.yml
cran-comments.md
docs/articles/img/class_structure.png
docs/articles/img/class_structure.svg
docs/articles/img/folder.svg
docs/articles/img/folder_structure.png
docs/articles/img/folder_structure.svg
docs/articles/img/image-tiff.svg
docs/articles/img/text-plain.svg
docs/articles/index.html
docs/articles/zonator-project.html
docs/articles/zonator-results.html
docs/articles/zonator-results_files/figure-html/curves-plotting-1-1.png
docs/articles/zonator-results_files/figure-html/curves-plotting-2-1.png
docs/articles/zonator-results_files/figure-html/curves-plotting-3-1.png
docs/articles/zonator-results_files/figure-html/curves-plotting-4-1.png
docs/articles/zonator-results_files/figure-html/curves-plotting-5-1.png
docs/articles/zonator-results_files/figure-html/curves-plotting-6-1.png
docs/articles/zonator-results_files/figure-html/curves-plotting-7-1.png
docs/articles/zonator-results_files/figure-html/perfomance-hist-1.png
docs/articles/zonator-results_files/figure-html/rank-raster-1-1.png
docs/articles/zonator-results_files/figure-html/rank-raster-2-1.png
docs/articles/zonator-results_files/figure-html/rank-raster-3-1.png
docs/articles/zonator-results_files/figure-html/rank-raster-4-1.png
docs/articles/zonator-results_files/figure-html/rank-rasterVis-1-1.png
docs/authors.html
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/ZCurvesDataFrame-class.html
docs/reference/ZGroupCurvesDataFrame-class.html
docs/reference/Zproject-class.html
docs/reference/Zresults-class.html
docs/reference/Zvariant-class.html
docs/reference/check_names.html
docs/reference/check_path.html
docs/reference/check_results.html
docs/reference/check_variant.html
docs/reference/check_zonation.html
docs/reference/clean_str.html
docs/reference/comp.html
docs/reference/copy_zvariant-methods.html
docs/reference/correlation.html
docs/reference/cost-methods.html
docs/reference/create_spp.html
docs/reference/create_zproject.html
docs/reference/cross_jaccard.html
docs/reference/curves-methods.html
docs/reference/decimalplaces.html
docs/reference/ds_alpha.html
docs/reference/featurenames-methods.html
docs/reference/features_info-methods.html
docs/reference/file_path_relative_to.html
docs/reference/file_path_sans_ext.html
docs/reference/get_dat_param-methods.html
docs/reference/get_tutorialdir.html
docs/reference/get_variant-methods.html
docs/reference/groupnames-methods.html
docs/reference/groups-methods.html
docs/reference/has_results-methods.html
docs/reference/index.html
docs/reference/initialize-methods.html
docs/reference/jaccard.html
docs/reference/leaf_tags.html
docs/reference/load_zproject.html
docs/reference/map_indexes.html
docs/reference/names-methods.html
docs/reference/nfeatures-methods.html
docs/reference/nvariants-methods.html
docs/reference/opendir-methods.html
docs/reference/outdir-methods.html
docs/reference/parse_bat.html
docs/reference/performance-methods.html
docs/reference/plot-ZCurvesDataFrame-missing-method.html
docs/reference/plot-ZGroupCurvesDataFrame-missing-method.html
docs/reference/plot_curves.html
docs/reference/plot_hist.html
docs/reference/ppa_lsm-methods.html
docs/reference/print-methods.html
docs/reference/rank_raster-methods.html
docs/reference/rank_rasters-methods.html
docs/reference/read_bat.html
docs/reference/read_curves.html
docs/reference/read_dat.html
docs/reference/read_features_info.html
docs/reference/read_groups.html
docs/reference/read_grp_curves.html
docs/reference/read_ppa_lsm.html
docs/reference/read_result_rasters.html
docs/reference/read_spp.html
docs/reference/regroup_curves.html
docs/reference/require_package.html
docs/reference/results-methods.html
docs/reference/run_bat.html
docs/reference/save_zvariant-methods.html
docs/reference/selection_coverage.html
docs/reference/set_dat_param-methods.html
docs/reference/set_tutorialdir.html
docs/reference/settings.dat
docs/reference/show-Zvariant-method.html
docs/reference/sppdata-methods.html
docs/reference/sppweights-methods.html
docs/reference/sub_curves.html
docs/reference/unique_grp_names.html
docs/reference/variants-methods.html
docs/reference/write_dat.html
docs/reference/zlegend.html
docs/reference/zparameters.html
inst/CITATION
inst/extdata/template.bat
inst/extdata/template.dat
inst/extdata/template.spp
inst/extdata/test_project/data/README.md
inst/extdata/test_project/data/species1.tif
inst/extdata/test_project/data/species2.tif
inst/extdata/test_project/data/species3.tif
inst/extdata/test_project/data/species4.tif
inst/extdata/test_project/data/species5.tif
inst/extdata/test_project/data/species6.tif
inst/extdata/test_project/data/species7.tif
inst/extdata/test_project/zsetup/01.bat
inst/extdata/test_project/zsetup/01/01.dat
inst/extdata/test_project/zsetup/01/01.spp
inst/extdata/test_project/zsetup/01/01_groups.txt
inst/extdata/test_project/zsetup/01/01_out/01.curves.txt
inst/extdata/test_project/zsetup/01/01_out/01.features_info.txt
inst/extdata/test_project/zsetup/01/01_out/01.grp_curves.txt
inst/extdata/test_project/zsetup/01/01_out/01.run_info.txt
inst/extdata/test_project/zsetup/01/01_out/01.txt
inst/extdata/test_project/zsetup/02.bat
inst/extdata/test_project/zsetup/02/02.dat
inst/extdata/test_project/zsetup/02/02.spp
inst/extdata/test_project/zsetup/02/02_groups.txt
inst/extdata/test_project/zsetup/02/02_out/02.curves.txt
inst/extdata/test_project/zsetup/02/02_out/02.features_info.txt
inst/extdata/test_project/zsetup/02/02_out/02.grp_curves.txt
inst/extdata/test_project/zsetup/02/02_out/02.run_info.txt
inst/extdata/test_project/zsetup/02/02_out/02.txt
inst/extdata/test_project/zsetup/03.bat
inst/extdata/test_project/zsetup/03/03.dat
inst/extdata/test_project/zsetup/03/03.spp
inst/extdata/test_project/zsetup/03/03_out/03.features_info.txt
inst/extdata/test_project/zsetup/03/03_out/03.run_info.txt
inst/extdata/test_project/zsetup/03/03_out/03.txt
inst/extdata/test_project/zsetup/04.bat
inst/extdata/test_project/zsetup/04/04.dat
inst/extdata/test_project/zsetup/04/04.spp
inst/extdata/test_project/zsetup/04/04_groups.txt
inst/extdata/test_project/zsetup/04/04_out/04.features_info.txt
inst/extdata/test_project/zsetup/04/04_out/04.run_info.txt
inst/extdata/test_project/zsetup/04/04_out/04.txt
inst/extdata/test_project/zsetup/05.bat
inst/extdata/test_project/zsetup/05/05.dat
inst/extdata/test_project/zsetup/05/05.spp
inst/extdata/test_project/zsetup/05/05_groups.txt
inst/extdata/test_project/zsetup/05/05_out/05.features_info.txt
inst/extdata/test_project/zsetup/05/05_out/05.run_info.txt
inst/extdata/test_project/zsetup/05/05_out/05.txt
inst/extdata/test_project/zsetup/06.batx
inst/extdata/test_project/zsetup/06/06.dat
inst/extdata/test_project/zsetup/06/06.spp
inst/extdata/test_project/zsetup/07.bat
inst/extdata/test_project/zsetup/07/07.dat
inst/extdata/test_project/zsetup/07/07.spp
inst/extdata/test_project/zsetup/07/07_groups.txt
inst/extdata/test_project/zsetup/07/07_out/07.curves.txt
inst/extdata/test_project/zsetup/07/07_out/07.features_info.txt
inst/extdata/test_project/zsetup/07/07_out/07.grp_curves.txt
inst/extdata/test_project/zsetup/07/07_out/07.run_info.txt
inst/extdata/test_project/zsetup/07/07_out/07.txt
inst/extdata/test_project/zsetup/README.md
inst/extdata/test_project/zsetup/cond_list.txt
inst/extdata/test_project/zsetup/groups.txt
inst/extdata/test_project/zsetup/invalid_groups.txt
inst/extras/build_and_check.R
inst/extras/build_and_check.sh
man/ZCurvesDataFrame-class.Rd man/ZGroupCurvesDataFrame-class.Rd man/Zproject-class.Rd man/Zresults-class.Rd man/Zvariant-class.Rd man/check_names.Rd man/check_path.Rd man/check_results.Rd man/check_variant.Rd man/check_zonation.Rd man/clean_str.Rd man/comp.Rd man/copy_zvariant-methods.Rd man/correlation.Rd man/cost-methods.Rd man/create_spp.Rd man/create_zproject.Rd man/cross_jaccard.Rd man/curves-methods.Rd man/decimalplaces.Rd man/ds_alpha.Rd man/featurenames-methods.Rd man/features_info-methods.Rd man/file_path_relative_to.Rd man/file_path_sans_ext.Rd man/get_dat_param-methods.Rd man/get_tutorialdir.Rd man/get_variant-methods.Rd man/groupnames-methods.Rd man/groups-methods.Rd man/has_results-methods.Rd man/initialize-methods.Rd man/jaccard.Rd man/leaf_tags.Rd man/load_zproject.Rd man/map_indexes.Rd man/names-methods.Rd man/nfeatures-methods.Rd man/nvariants-methods.Rd man/opendir-methods.Rd man/outdir-methods.Rd man/parse_bat.Rd man/performance-methods.Rd man/plot-ZCurvesDataFrame-missing-method.Rd man/plot-ZGroupCurvesDataFrame-missing-method.Rd man/plot_curves.Rd man/plot_hist.Rd man/ppa_lsm-methods.Rd man/print-methods.Rd man/rank_raster-methods.Rd man/rank_rasters-methods.Rd man/read_bat.Rd man/read_curves.Rd man/read_dat.Rd man/read_features_info.Rd man/read_groups.Rd man/read_grp_curves.Rd man/read_ppa_lsm.Rd man/read_result_rasters.Rd man/read_spp.Rd man/regroup_curves.Rd man/require_package.Rd man/results-methods.Rd man/run_bat.Rd man/save_zvariant-methods.Rd man/selection_coverage.Rd man/set_dat_param-methods.Rd man/set_tutorialdir.Rd man/show-Zvariant-method.Rd man/sppdata-methods.Rd man/sppweights-methods.Rd man/sub_curves.Rd man/unique_grp_names.Rd man/variants-methods.Rd man/write_dat.Rd man/zlegend.Rd man/zparameters.Rd tests/test-all.R tests/testthat/test-00-utilities.R tests/testthat/test-01-tutorial-data.R tests/testthat/test-02-parsing.R tests/testthat/test-03-writing.R tests/testthat/test-04-zresults.R tests/testthat/test-05-zvariant.R tests/testthat/test-06-zproject.R tests/testthat/test-07-zonation.R tests/testthat_long_running/test-08-results-compare-rasters.R
vignettes/.gitignore
vignettes/img/class_structure.png
vignettes/img/class_structure.svg
vignettes/img/folder.svg
vignettes/img/folder_structure.png
vignettes/img/folder_structure.svg
vignettes/img/image-tiff.svg
vignettes/img/text-plain.svg
vignettes/zonator-project.Rmd vignettes/zonator-results.Rmd
cbig/zonator documentation built on Aug. 21, 2017, 10:46 a.m.