Man pages for cbig/zonator
Utilities for Zonation Spatial Conservation Prioritization Software
| check_names | A function check feature/group names. |
| check_path | A function to deal with potentially relative paths. |
| check_results | Check zvariant object's attributes for consistency. |
| check_variant | Check zvariant object's attributes for consistency. |
| check_zonation | Check if Zonation is installed. |
| clean_str | Clean leading and trailing whitespaces from a given string.... |
| comp | Compare matrices in various ways. |
| copy_zvariant-methods | Copy existing variant as a new 'Zvariant' object. |
| correlation | Correlation between two matrices. |
| cost-methods | Get cost data of a Z* object. |
| create_spp | Generate spp_file based on a directory of input rasters. |
| create_zproject | Create a new Zonation project on file system. |
| cross_jaccard | Calculate Jaccard coefficients bewteen all the RasterLayers... |
| curves-methods | Get curves results data of a Z* object. |
| decimalplaces | Find out the number of decimal places in a number. |
| ds_alpha | Calculate alpha value for distribution smoothing. |
| featurenames-methods | Feature names of Zonation variant. |
| features_info-methods | Get the features info component of Zresults. |
| file_path_relative_to | Transform an absolute path to relative path in relation to... |
| file_path_sans_ext | Re-implementation of 'file_path_sans_ext' in 'tools'. This... |
| get_dat_param-methods | Get a specified run setting parameter value |
| get_tutorialdir | Get the directory of Zonation tutorial. |
| get_variant-methods | Get a specified variant in a Zonation project |
| groupnames-methods | Get group names for a class 'Zvariant' instance. |
| groups-methods | Get group codes of a class 'Zvariant' instance. |
| has_results-methods | Check which results a Z* object has. |
| initialize-methods | Create an instance of the Zproject class using... |
| jaccard | Calculate the Jaccard coefficient. |
| leaf_tags | Find all the leaf tags in a potentially nested list. The... |
| load_zproject | Load a Zonation project. |
| map_indexes | Map vector to actual column indexes. |
| names-methods | Names of variants in Zproject |
| nfeatures-methods | Get the number of feature included in a Zonation variant |
| nvariants-methods | Get the number of variants included in a Zonation project |
| opendir-methods | Open the directory of a Zproject using the system file... |
| outdir-methods | Get path to output directory. |
| parse_bat | Parse the content of a Zonation batch (bat) file and make OS... |
| performance-methods | Get performance levels. |
| plot_curves | Create ggplot2 object for performance curves. |
| plot_hist | Create a ggplot2 histogram of a 'RasterLayer'. |
| plot-ZCurvesDataFrame-missing-method | Plot Zonation performance curves for individual features. |
| plot-ZGroupCurvesDataFrame-missing-method | Plot Zonation performance curves for groups. |
| ppa_lsm-methods | Get ppa.lsm results data of a Z* object. |
| print-methods | Print Zvariant information. |
| rank_raster-methods | Get Zonation result rank raster. |
| rank_rasters-methods | Get Zonation result rank rasters of a project. |
| read_bat | Read Zonation-specific (MS Windows) batch file. |
| read_curves | Read in performance curves produced by Zonation. |
| read_dat | Read a dat file (Windows-style ini-file) for configuration... |
| read_features_info | Read a features info file. |
| read_groups | Read a groups file. |
| read_grp_curves | Read in performance curves for grouped features produced by... |
| read_ppa_lsm | Read Zonation post-processing analysis (ppa) result file. |
| read_result_rasters | Read Zonation-specific raster result files. |
| read_spp | Read Zonation variant specific spp-file. |
| regroup_curves | Re-calculate group curves data. |
| require_package | Requires a given package and if not present installs and... |
| results-methods | Getter method for results ('Zresults') in a class 'Zvariant'... |
| run_bat | Try to run a given batch (bat) files. |
| save_zvariant-methods | Saves the current state of an instance of 'Zvariant-class' on... |
| selection_coverage | Intersection of two coverages. |
| set_dat_param-methods | Set a specified run setting parameter value |
| show-Zvariant-method | Print Zvariant information. |
| sppdata-methods | Simple getter mehtod for spp data in a class... |
| sppweights-methods | Get biodiversity feature weights of a Zonation variant |
| sub_curves | Get subset of curves/group curves columns. |
| unique_grp_names | Get unique group names. |
| variants-methods | Get all variants in a Zonation project |
| write_dat | Write a Zonation run configuration (dat) file. |
| ZCurvesDataFrame-class | The ZCurvesDataFrame class |
| ZGroupCurvesDataFrame-class | The ZGroupCurvesDataFrame class |
| zlegend | Get various Zonation legends |
| zparameters | Get all Zonation run configuration parameters. |
| Zproject-class | The Zproject class |
| Zresults-class | The Zresults class |
| Zvariant-class | The Zvariant class |
