tools/pancreas.R
In cbl-imagine/CellID: Unbiased Extraction of Single Cell Identity using Multiple Correspondence Analysis
library(SingleCellExperiment)
library(readr)
download.file(
"https://scrnaseq-public-datasets.s3.amazonaws.com/scater-objects/segerstolpe.rds",
destfile = "data/pancreas.rds"
)
sce <- read_rds("data/pancreas.rds")
sce <- sce[, !sce$cell_type1 == "not applicable"]
sce <-
sce[str_subset(rownames(sce), pattern = "ERCC", negate = TRUE), ]
write_rds(sce, "data/scePancreas.rds")
cbl-imagine/CellID documentation built on July 22, 2020, 7:18 p.m.
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library(SingleCellExperiment)
library(readr)
download.file(
"https://scrnaseq-public-datasets.s3.amazonaws.com/scater-objects/segerstolpe.rds",
destfile = "data/pancreas.rds"
)
sce <- read_rds("data/pancreas.rds")
sce <- sce[, !sce$cell_type1 == "not applicable"]
sce <-
sce[str_subset(rownames(sce), pattern = "ERCC", negate = TRUE), ]
write_rds(sce, "data/scePancreas.rds")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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