inst/examples/README.md

In cboettig/earlywarning: Detection of Early Warning Signals for Catastrophic Bifurcations

Dockerfile for earlywarning package

To run any of the analyses from this paper, install docker

For instance, we can run the simulation.Rmd script using:

docker run -w /earlywarning/inst/examples -d \
  --name earlywarning cboettig/earlywarning \
  Rscript -e 'rmarkdown::render("simulation.Rmd")'

and simply replace simulation.Rmd with chemostat.Rmd or glaciation.Rmd to run the corresponding analysis.

Copy the resulting (stand-alone) html files to the host for viewing:

docker cp earlywarning:/earlywarning/inst/examples/simulation.html .

cboettig/earlywarning documentation built on May 13, 2019, 2:07 p.m.