format_qd: Format quickest detection results for plotting
In cbuelo/tvsews: Time vs. Space Early Warning Statistics

Description Usage Arguments Value Examples

Format quickest detection results for plotting

format_qd(
  qd_stats,
  var_cols = c("Manual_Chl", "BGA_HYLB", "DO_Sat", "pH"),
  stats = c("SD", "Ar1"),
  bloom_fert_df = bloom_fert_dates,
  exp_lakes = c("T", "R"),
  just_alarm_DOYs = FALSE
)

`qd_stats`	data frame, output from `run_qd`
`var_cols`	character vector, variable names that are columns of data containing time series to calculate rolling window stats on
`stats`	character vector, statistics to format alarms for, default = c("SD", "Ar1)
`bloom_fert_df`	data frame of fertilization start and end dates, see `bloom_fert_dates` for default and formatting
`exp_lakes`	character vector, values in Lake column of qd_stats that correspond to experimental lakes
`just_alarm_DOYs`	TRUE or FALSE (default), should results be filtered to just DOYs that have an alarm (in any variable)?

data frame with quickest detection alarm info

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rw_stats <- calc_rolling_stats(ts_data, var_cols = c("DO_Sat"))
qd_stats <- run_qd(rw_stats, var_cols = c("DO_Sat"))
qd_alarms <- format_qd(qd_stats, var_cols = c("DO_Sat"))