Description Usage Arguments Examples
This is what you need for getting PAM50 prediction for each sample. It takes RNA-seq values (raw or CPM) and returns PAM50 subtype for each sample.
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df |
dataframe, rows are genes columns are samples. Row names has to be EntrezID. |
cutoff |
numeric (0-1, default = 0), threshold value for calling the prediction. 0 means no cutoff, predicted subtype is whichever subtype gives the highest probability. 0.8 means the predicted subtype has to have probability > 0.8, otherwise 'NA' is the label. |
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