| bio_com | Generate group comments for biological parameter file |
| bio_dem | Generate demersel flag from Fishbase |
| biol_template | Biological parameters template file |
| convert_atlantis_output | Load Atlantis outputfiles (netcdf) |
| dummy_hydro | Generate dummy hydro data for Atlantis |
| extract_linf_k_fishbase | Extract values for Linf and k from www.fishbase.org |
| gen_init | Generate an Atlantis initial conditions file |
| get_availability_matrix | Extract the availability matrix from the biological... |
| get_ids_fishbase | Extract fishbase IDs using the package "rfishbase" |
| init_data | Format Atlantis initial conditions data |
| required_init | Required initial variables |
| rlantis-package | Helper tools for creating, manipulating, and viewing Atlantis... |
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