In cdmuir/bayCi: Bayesian Photosynthetic Response Curves Using Stan

knitr::opts_chunk$set(
  warning = FALSE,
  message = FALSE,
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)

bayCi

The goal of bayCi is to ...

Installation

And the development version from GitHub with:

# install.packages("devtools")
devtools::install_github("cdmuir/bayCi")

Fit a single Rapid A-Ci Response (RACiR) curve

Example

This is a basic example which shows you how to solve a common problem:

Read LICOR data

• determine format
• check for errors
• remove extraneous lines
• find covariate columns
• if given file name, read single file
• if given multiple file names, read and row bind
• if given directory, read all file names and row bind
• set class. raw_licor_data

Single file

library(bayCi)
## basic example code

Combine multiple files

Prepare data

Contributors

• Chris Muir

Comments and contributions

I welcome comments, criticisms, and especially contributions! GitHub issues are the preferred way to report bugs, ask questions, or request new features. You can submit issues here:

https://github.com/cdmuir/bayCi/issues

Meta

• Please report any issues or bugs.
• License: MIT
• Please note that the 'bayCi' project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

cdmuir/bayCi documentation built on Jan. 19, 2020, 12:27 a.m.