get_all: Accessor functions for scan_directory() output.

In cgeisenberger/crystalmeth: Streamlined Methylation-Based Classification of Tumors

Description

After scanning a directory with scan_directory(), the accessor functions listed here can be used to extract useful information.

Usage

get_all(obj)

get_invalid(obj)

get_green_only(obj)

get_red_only(obj)

get_cases(obj)

Arguments

obj	Output of scan_directory

Details

get_all

Lists all files

get_invalid

Lists all non-idat files

get_green_only

Lists basenames with missing RED channel data

get_red_only

Lists basenames with missing GREEN channel data

get_cases

Lists basenames of complete cases

Value

Vector with file names or basenames (see above)

cgeisenberger/crystalmeth documentation built on Aug. 28, 2020, 9:35 a.m.