Files in cgplab/PAMES
Purity Assessment from clonal MEthylation Sites
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
PAMES.Rproj
R/PAMES.R
R/data.R
R/find_informative_regions.R
R/find_informative_sites.R
R/get_AUC.R
R/get_purity.R
R/reduce_to_regions.R
README.md
data-raw/illumina27k_hg19.txt.gz
data-raw/illumina27k_hg38.txt.gz
data-raw/illumina450k_hg19.txt.gz
data-raw/illumina450k_hg38.txt.gz
data-raw/raw.R
data/bs_seq_toy_matrix.rda
data/bs_seq_toy_sites.rda
data/control_toy_data.rda
data/cpg_islands.rda
data/illumina27k_hg19.rda
data/illumina27k_hg38.rda
data/illumina450k_hg19.rda
data/illumina450k_hg38.rda
data/tumor_toy_data.rda
inst/CITATION
man/PAMES.Rd
man/bs_seq_toy_matrix.Rd
man/bs_seq_toy_sites.Rd
man/control_toy_data.Rd
man/cpg_islands.Rd
man/find_informative_regions.Rd
man/find_informative_sites.Rd
man/get_AUC.Rd
man/get_purity.Rd
man/illumina27k_hg19.Rd
man/illumina27k_hg38.Rd
man/illumina450k_hg19.Rd
man/illumina450k_hg38.Rd
man/reduce_to_regions.Rd
man/remove_close_sites.Rd
man/single_AUC.Rd
man/summarise_region.Rd
man/tumor_toy_data.Rd
tests/testthat.R
tests/testthat/test-find_informative_regions.R
tests/testthat/test-find_informative_sites.R
tests/testthat/test-get_AUC.R
tests/testthat/test-get_purity.R
tests/testthat/test-reduce_to_regions.R
