Man pages for cgplab/PAMES
Purity Assessment from clonal MEthylation Sites
| bs_seq_toy_matrix | BS-Seq Toy data |
| bs_seq_toy_sites | BS-Seq Toy sites |
| control_toy_data | Illumina Control Toy data |
| cpg_islands | Curated set of CpG islands |
| find_informative_regions | Select informative regions (extended) |
| find_informative_sites | Discover informative CpG sites |
| get_AUC | Calculate Area Under Curve comparing tumor and control... |
| get_purity | Calculate purity or tumor content samples |
| illumina27k_hg19 | Illumina 27k BeadChip mapped to Genome Reference hg19 |
| illumina27k_hg38 | Illumina 27k BeadChip mapped to Genome Reference hg38 |
| illumina450k_hg19 | Illumina 27k BeadChip mapped to Genome Reference hg19 |
| illumina450k_hg38 | Illumina 450k BeadChip mapped to Genome Reference hg38 |
| PAMES | PAMES: Purity Assessment from clonal MEthylation Sites |
| reduce_to_regions | Reduce beta values from CpG sites to genomic regions |
| remove_close_sites | Remove close sites |
| single_AUC | Calculate AUC |
| summarise_region | Reduce many CpG sites to one CpG region |
| tumor_toy_data | Illumina Tumor Toy data |
