Man pages for cgplab/ROCkerMeth
Receiver Operating Characteristic curves analyzer for DNA methylation data
| auc_toy_vector | AUC toy example |
| compute_AUC | Compute Area Under Curve for a matrix of samples |
| compute_z_scores | Compute a Z-like score to estimate quality of DMRs |
| control_example | AUC toy example |
| control_toy_table | Control toy table |
| find_dmrs | Find Differentially Methylated Regions across whole genome |
| illumina450k_hg19 | Illumina 450K hg19 |
| illumina450k_hg38 | Illumina 450K hg38 |
| illuminaEPIC_hg19 | Illumina EPIC hg19 |
| meth_state_finder | Infer Differential Methylation Status |
| PRAD_auc | PRAD AUC |
| PRAD_molecular_subtypes | PRAD molecular subtypes |
| PRAD_NT_subset | PRAD NT subset |
| PRAD_sample_score | PRAD sample score |
| PRAD_TP_subset | PRAD TP subset |
| reference_example | Reference table example |
| reference_toy_table | Reference toy table |
| Rockermeth | Rockermeth |
| segmentator | Define Differentially Methylated Regions |
| single_AUC | Compute AUC |
| tumor_example | Tumor example |
| tumor_toy_table | Tumor toy table |
| write_dmr | Generate files from a set of DMR |
| write_z_scores | Generate SEG file from a table of Z-scores |
