segmentator | R Documentation |
Given a set of methylation states produced by [meth_states_finder] and a set of methylation (beta) values differences between tumor and control samples, this function defines stretches of equal states (segments).
segmentator( tumor_beta_mean, control_beta_mean, meth_states, coordinates, max_dist )
tumor_beta_mean |
A vector of average methylation (beta) values. |
control_beta_mean |
A vector of average methylation (beta) values. |
meth_states |
A vector of methylation states (1, 2, 3, NA). |
coordinates |
Ordered genomic positions of methylation sites |
max_dist |
Maximum distance between two contiguous sites in a DMR. |
A data.frame with information about DMRs
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