write_z_scores: Generate SEG file from a table of Z-scores

In cgplab/ROCkerMeth: Receiver Operating Characteristic curves analyzer for DNA methylation data

Generate SEG file from a table of Z-scores

Description

For a quick visualization using a genome browser like IGV, generates a [SEG](https://bit.ly/2J2WZdZ) file scores reporting Z-scores for tumor and normal samples generated by [compute_z_scores].

Usage

write_z_scores(z_scores_data, path)

Arguments

z_scores_data	A list generated by [compute_z_scores].
path	A string including absolute or relative path which a prefix is added to ("_z_scores.set")

Details

NOTE: SEG files have 1-based coordinates.

Value

Nothing. Only saves output tables.

cgplab/ROCkerMeth documentation built on March 27, 2022, 9:57 p.m.