API for cgrlab/TypeSeqHPV
TypeSeqHPV Analysis Functions and Workflows
| Global functions | |
|---|---|
| calculate_expected_control_results | Source code |
| coinfection_rate_histogram | Source code |
| convert_bam_to_json | Source code |
| create_full_run_read_metrics_df | Source code |
| create_hpv_types_table | Source code |
| create_inital_pos_neg_matrix | Source code |
| extract_header | Source code |
| finalize_pn_matrix | Source code |
| get_run_metadata | Source code |
| hpv_status_circle_plot | Source code |
| ion_read_processor | Source code |
| lineage_plot | Source code |
| percent_positive_histogram | Source code |
| plate_summary | Source code |
| prepare_grouped_samples_only_matrix_outputs | Source code |
| prepare_lineage_df | Source code |
| read_in_bam_header | Source code |
| read_in_parameters_csv | Source code |
| render_ion_qc_report | Source code |
| sample_summary | Source code |
| scaling_of_b2m_human_control | Source code |
| signal_to_noise_plot | Source code |
| split_pn_matrix_into_multiple_deliverables | Source code |
| startplugin_parse | Source code |
| ts_demultiplex_bc2 | Source code |
| ts_read_metrics | Source code |
| write_all_csv_files | Source code |
