API for cgrlab/TypeSeqHPV
TypeSeqHPV Analysis Functions and Workflows

Global functions
adam_demux Source code
calculate_expected_control_results Source code
coinfection_rate_histogram Source code
control_summary Source code
convert_bam_to_json Source code
create_full_run_read_metrics_df Source code
create_hpv_types_table Source code
create_inital_pos_neg_matrix Source code
extract_header Source code
finalize_pn_matrix Source code
get_run_metadata Source code
hpv_status_circle_plot Source code
illumina_read_processor_load_packages Source code
install_binaries Source code
ion_read_processor Source code
ion_read_processor_load_packages Source code
ion_report_get_args Source code
ion_report_load_packages Source code
lineage_plot Source code
methyl_command_line_args Source code
methyl_startplugin_parse Source code
methyl_variant_filter Source code
percent_positive_histogram Source code
plate_summary Source code
prepare_grouped_samples_only_matrix_outputs Source code
prepare_lineage_df Source code
read_in_bam_header Source code
read_in_parameters_csv Source code
render_ion_qc_report Source code
sample_summary Source code
samtools_sort Source code
scaling_of_b2m_human_control Source code
signal_to_noise_plot Source code
split_pn_matrix_into_multiple_deliverables Source code
startplugin_parse Source code
ts_demultiplex_bc2 Source code
ts_read_metrics Source code
tvc_cli Source code
vcf_to_dataframe Source code
write_all_csv_files Source code
cgrlab/TypeSeqHPV documentation built on March 24, 2019, 10:13 a.m.