NCI CGR laboratory HPV typing analysis workflows and R package
TypeSeq HPV is an R package that includes
We recommend running the pipeline inside the docker container cgrlab/typeseqhpv:final_220316
as it contains all the required dependencies in the correct locations.
The workflow manager we use is drake https://github.com/ropensci/drake
We also include a wrapper for the Ion Torrent server that can be uploaded via the provided zip file. The prerequisite for running the Ion Torrent Plugin successfully is to install docker on the server ahead of time.
https://github.com/NCI-CGR/IonTorrent_plugins/tree/main/TypeSeqHPV-TSv1/archive
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.