API for chambm/customProDB
Generate customized protein databases from NGS data for proteomics search

Global functions
Bed2Range Man page Source code
Ensembl.fetchAttribTypeIdForTopLevelSequence Source code
Ensembl.fetchChromLengthsFromCoreUrl Source code
Ensembl.fetchTopLevelSequenceIds Source code
Ensembl.getFtpUrlToMySQL Source code
Ensembl.getMySQLCoreDir Source code
Ensembl.getMySQLCoreUrl Source code
Ensembl.getTable Source code
Ensembl.getTable.seq_region Source code
Ensembl.listMySQLCoreDirs Source code
InputVcf Man page Source code
JunctionType Man page Source code
Multiple_VCF Man page Source code
OutputNovelJun Man page Source code
OutputVarprocodingseq Man page Source code
OutputVarproseq Man page Source code
OutputVarproseq_single Man page Source code
Outputaberrant Man page Source code
Outputproseq Man page Source code
OutputsharedPro Man page Source code
Positionincoding Man page Source code
PrepareAnnotationEnsembl Man page Source code
PrepareAnnotationGCF Man page Source code
PrepareAnnotationRefseq Man page Source code
SharedJunc Man page Source code
Varlocation Man page Source code
aaVariation Man page Source code
calculateRPKM Man page Source code
current_script_file Man page Source code
customProDB Man page
customProDB-package Man page
download.filename Source code
easyRun Man page Source code
easyRun_mul Man page Source code
expect_equal_to_reference Man page Source code
fastComplement Man page Source code Source code
fetchChromLengthsFromEnsembl Source code
gen_splicmatrix Source code Source code
getCodingFastaUrlFromUCSC Man page Source code
getProteinFastaUrlFromUCSC Man page Source code
getVariantAnnotation Man page Source code
lsFtpUrl Source code
makeExonRankCol Source code
map2trans Source code
matchCircularity Source code
on.fail.diff Source code
on.update.edit Source code
on.update.view Source code
read_or_update_local_cache Man page Source code
read_or_update_local_cacheDb Source code
temp_unzip Source code
variantType Man page Source code
chambm/customProDB documentation built on Feb. 22, 2019, 12:10 a.m.