fastComplement: Pure R function to turn a character vector of nucleotides...
In chambm/customProDB: Generate customized protein databases from NGS data for proteomics search
Description
Usage
Arguments
Value
Examples
Description
Pure R function to turn a character vector of nucleotides into a reverse complement vector.
When running on many strings, this is much faster than Biostrings::reverseComplement(DNAString).
Usage
1
fastComplement(naString)
Arguments
naString
a character vector of nucleotides; IUPAC ambiguous nucleotides are supported
Value
the reverse complement of naString
Examples
1
2
fastComplement(c("GAT", "TACA")) # "CTA" "ATGT"
fastComplement("MAW") # "KTW"
chambm/customProDB documentation built on May 31, 2019, 12:08 p.m.
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Description Usage Arguments Value Examples
Description
Pure R function to turn a character vector of nucleotides into a reverse complement vector. When running on many strings, this is much faster than Biostrings::reverseComplement(DNAString).
Usage
1 | fastComplement(naString)
|
Arguments
naString |
a character vector of nucleotides; IUPAC ambiguous nucleotides are supported |
Value
the reverse complement of naString
Examples
1 2 | fastComplement(c("GAT", "TACA")) # "CTA" "ATGT"
fastComplement("MAW") # "KTW"
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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