R/data.R

In changgee/Nebula: Network-Based Latent-Dirichlet Subtype Analysis

#' Colon adenocarcinoma data
#'
#' Sample feature and network information for 339 TCGA colon adenocarcinoma data
#' (COAD) for demonstration purposes
#'
#' @format A list with three 2 elements
#' \describe{
#'    \item{modal}{List of 2 matrices containing feature information}
#'         \item{gene_expr}{1239 log-scaled gene expression data from 339 samples}
#'         \item{dna_alt}{binary matrix of 187 genes from 339 samples,
#'         indicating DNA alteration (1) or no alteration (0)}
#'    \item{network}{4-column matrix containing network information between and
#'    within modalities.}
#' }
#'
"colon"