Description Usage Arguments Details Value Author(s) References Examples
This function is to estimate pairwise linkage disequilibrium with EM algorithm.
1 | ld.em(genotype)
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genotype |
numeric matrix or data frame with genotype data coded as 0, 1, 2. No missing data is allowed. |
There is no missing data.
The list contains the LD matrix, D' matrix and r^2 matrix.
Chan Wang and Yue-Qing Hu
Chan Wang, Leiming Sun, Liming Li and Yue-Qing Hu, Linkage Disequilibrium on Improving Power in Case-Control Association Study
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