charles-plessy/clonotypeR.old: High throughput analysis of T cell antigen receptor sequences
High throughput analysis of T cell antigen receptor sequences The genes encoding T cell receptors are created by somatic recombination, generating an immense combination of V, (D) and J segments. Additional processes during the recombination create extra sequence diversity between the V an J segments. Collectively, this hyper-variable region is called the CDR3 loop.
The purpose of this package is to process and quantitatively analyse millions of V-CDR3-J combination, called clonotypes, from multiple sequence libraries.
Getting started
Browse package contents
Package details |
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| Author | Charles Plessy <plessy@riken.jp> |
| Bioconductor views | Sequencing |
| Maintainer | Charles Plessy <plessy@riken.jp> |
| License | file LICENSE |
| Version | 1.7.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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