unique_clonotypes: Lists unique clonotypes in libraries.

In charles-plessy/clonotypeR.old: High throughput analysis of T cell antigen receptor sequences

Description

Finds all the clonotypes expressed in one or more libraries, and returns a vector where they are listed once. This vector can be used to subset a clonotype_table.

Usage

unique_clonotypes(..., data)

Arguments

...	One or more character vectors contain clonotype library names
data	The name of the clonotype_table where the data is stored.

Value

Character vector of clonotype names. Their order follows the original row name order of the clonotype_table.

Author(s)

Charles Plessy

See Also

clonotype_table, common_clonotypes

Examples

# Load example data
clonotypes.long <- read_clonotypes(system.file('extdata', 'clonotypes.txt.gz', package = "clonotypeR"))
clonotypes <- clonotype_table(levels(clonotypes.long$lib), data=clonotypes.long)
summary(clonotypes)

# List clonotypes found in library A.
unique_clonotypes("A", data=clonotypes)

# List clonotypes found in library A or B.
unique_clonotypes("A","B", data=clonotypes)

charles-plessy/clonotypeR.old documentation built on May 13, 2019, 3:31 p.m.