API for chasemc/IDBac_App
Protein and small molecule analysis of bacteria by MALDI-TOF MS

Global functions
.calculateMatches Man page
.clust Man page
.grepAcquDoubleValue Man page
.grepAcquValue Man page
.resample Man page
.sampleName Man page
.text.coord.hclust Man page
MAN_Server Man page Source code
addAttribs Man page Source code
addClass Man page Source code
addDotsActionUI Man page Source code
app_server Man page Source code
app_ui Man page Source code
as.binary.matrix.hclust Man page Source code
availableSampleNames Man page Source code
baserMirrorPlot Man page Source code
bootlabels.hclust Man page Source code
bootstrap Man page Source code
brukerDataSpotsandPaths Man page Source code
brukerToMzml_popup Man page Source code
bsCollapse Man page Source code
bsCollapsePanel Man page Source code
calculateMatches Source code
changeDendPartColor Man page Source code
changeDendPartSize Man page Source code
chartoRawtoCompressed Man page Source code
choose_dir Man page Source code
chooserInput Man page Source code
cleanWSpace Man page Source code
clust Source code
collapseReplicates Man page Source code
colorBlindPalette Man page Source code
colorPicker Man page Source code
colordendLabelsUI Man page Source code
colordendLinesUI Man page Source code
colored_dots Man page Source code
compress Man page Source code
convertDataTab_Server Man page Source code
convertDataTab_UI Man page Source code
convertDelim_Server Man page Source code
convertDelim_UI Man page Source code
convertMZ_Server Man page Source code
convertMZ_UI Man page Source code
convertMicrotyper_Server Man page Source code
convertMicrotyper_UI Man page Source code
convertOneBruker_Server Man page Source code
convertOneBruker_UI Man page Source code
copyDB_dbAttach Man page Source code
copyDB_setupMeta Man page Source code
copyToNewDatabase Man page Source code
copyingDbPopup Man page Source code
createMetaSQL Man page Source code
createNewSQLITEdb Man page Source code
createPool Man page Source code
createSpectraSQL Man page Source code
createXMLSQL Man page Source code
databaseSelector_UI Man page Source code
databaseSelector_server Man page Source code
databaseTabServer Man page Source code
databaseTabUI Man page Source code
databaseTabUIFunc Man page Source code
decompress Man page Source code
dendDotsServer Man page Source code
dendDotsUI Man page Source code
dendrogramCreator Man page Source code
dendrogramCreatorUI Man page Source code
deserial Man page Source code
displayMissingProteinUI Man page Source code
distMatrix Man page Source code
downloadHier Man page Source code
downloadSmNet_UI Man page Source code
downloadSvg Man page Source code
dropNulls Man page Source code
experimentSummary_Server Man page Source code
experimentSummary_UI Man page Source code
exportSamples_server Man page Source code
exportSamples_ui Man page Source code
exportmzML Man page Source code
extractHPCConstants Man page Source code
findAcquisitionInfo Man page Source code
findMSconvert Man page Source code
findRawSHAandFile Man page Source code
findmz Man page Source code
getAllStrain_IDsfromSQL Man page Source code
getAttribs Man page Source code
getOS Man page Source code
getPeakData Man page Source code
getSmallMolSpectra Man page Source code
grepAcquDoubleValue Source code
grepAcquValue Source code
hashR Man page Source code
insertIntoIndividualSpectra Man page Source code
insertIntoMassTable Man page Source code
insertMetadataColumns Man page Source code
labelsFromBrushedDendrogram Man page Source code
mQuantToMassVec Man page Source code
manPageProtDend_Server Man page Source code
manPageProtDend_UI Man page Source code
microtyperTomzML Man page Source code
mirrorPlot Man page Source code
mirrorPlotDownload_UI Man page Source code
mirrorPlotsSettings_UI Man page Source code
mirrorPlots_Server Man page Source code
mirrorPlots_UI Man page Source code
modDendDotsMod_WellPanel Man page Source code
modDendLabels_WellPanel Man page Source code
modDendLines_WellPanel Man page Source code
mquantSpecFromSQL Man page Source code
multipleMaldiPlates Man page Source code
onLoad Source code
parseDelimitedMS Man page Source code
path_sanitize Man page Source code
pcaCalculation Man page Source code
pcoaCalculation Man page Source code
peakBinner Man page Source code
peakRetentionSettings_Server Man page Source code
peakRetentionSettings_UI Man page Source code
plateMapUI Man page Source code
platemod Man page Source code
plotHier Man page Source code
plotly_3d_scatter Man page Source code
popup3 Man page Source code
popup4 Man page Source code
popupPlotTsne_UI Man page Source code
popupPlotTsne_server Man page Source code
popupPlot_UI Man page Source code
popupPlot_server Man page Source code
processMZML Man page Source code
processProteinSpectra Man page Source code
processSmallMolSpectra Man page Source code
processXMLIndSpectra Man page Source code
proteinPeaksToMatrix Man page Source code
readAcquFile Man page Source code
resample Source code
runDendDots Man page Source code
run_app Man page Source code
sampMeta Man page Source code
sampMetaOutput Man page Source code
sampleChooser_UI Man page Source code
sampleChooser_server Man page Source code
sampleName Source code
selectDirectory_Server Man page Source code
selectDirectory_UI Man page Source code
selectInjections_UI Man page Source code
selectInjections_server Man page Source code
serial Man page Source code
serializeXML Man page Source code
smMANPlot_UI Man page Source code
smallMolDFtoNetwork Man page Source code
smallMolDendrogram_UI Man page Source code
smallmirrorPlotsSampleSelect_UI Man page Source code
smallmirrorPlots_Server Man page Source code
smallmirrorPlots_UI Man page Source code
spectraProcessingFunction Man page Source code
spectrumMatrixToMALDIqaunt Man page Source code
sqlCreate_version Man page Source code
sqlTableArchitecture Man page Source code
sql_CreateIndividualSpectra Man page Source code
sql_CreateVersionTable Man page Source code
sql_CreatemassTable Man page Source code
sql_CreatemetaData Man page Source code
sql_CreatexmlTable Man page Source code
startingFromBrukerFlex Man page Source code
startingFromMZ Man page Source code
subtractMatrixBlank Man page Source code
text.coord.hclust Source code
transferToNewDB_UI Man page Source code
transferToNewDB_server Man page Source code
tsneCalculation Man page Source code
tsneUiPop Man page Source code
ui_proteinClustering Man page Source code
ui_smallMolMan Man page Source code
updateCollapse Man page Source code
updateMeta_UI Man page Source code
updateMeta_server Man page Source code
chasemc/IDBac_App documentation built on March 25, 2019, 6:58 p.m.