API for chasemc/IDBac_App
MALDI-TOF MS Protien and Small Molecule Analysis
| Global functions | |
|---|---|
| %>% | Man page |
| .calculateMatches | Man page Source code |
| .checkPool | Man page Source code |
| .clust | Man page Source code |
| .copy_db | Man page Source code |
| .db_path_from_pool | Man page Source code |
| .download_idbac_exe | Man page Source code |
| .getLatestStableVersionPage | Man page Source code |
| .getSmallPeaksFromBrush | Man page Source code |
| .get_one_subtree | Man page Source code |
| .grepAcquDoubleValue | Man page Source code |
| .grepAcquValue | Man page Source code |
| .onLoad | Source code |
| .parse_json_peaks | Man page Source code |
| .resample | Man page Source code |
| .retrieve_peaks_from_pool | Man page Source code |
| .sampleName | Man page Source code |
| .scale_ppm | Man page Source code |
| .text.coord.hclust | Man page Source code |
| MAN_Server | Man page Source code |
| addAttribs | Man page Source code |
| addClass | Man page Source code |
| app_server | Man page Source code |
| app_ui | Man page Source code |
| appendDendLabsUI | Man page Source code |
| as.binary.matrix.hclust | Man page Source code |
| assembleMirrorPlots | Man page Source code |
| baserMirrorPlot | Man page Source code |
| bootlabels.hclust | Man page Source code |
| bootstrap | Man page Source code |
| brukerToMzml_popup | Man page Source code |
| bsCollapse | Man page Source code |
| bsCollapsePanel | Man page Source code |
| changeDendPartColor | Man page Source code |
| changeDendPartSize | Man page Source code |
| chartoRawtoCompressed | Man page Source code |
| choose_dir | Man page Source code |
| chooserInput | Man page Source code |
| colorBlindPalette | Man page Source code |
| colorMANBy_UI | Man page Source code |
| colorPicker | Man page Source code |
| colordendLabelsUI | Man page Source code |
| colordendLinesUI | Man page Source code |
| colored_dots | Man page Source code |
| compress | Man page Source code |
| controlBrukerDisplay | Man page Source code |
| convertDataTab_Server | Man page Source code |
| convertDataTab_UI | Man page Source code |
| convertDelim_Server | Man page Source code |
| convertDelim_UI | Man page Source code |
| convertMZ_Server | Man page Source code |
| convertMZ_UI | Man page Source code |
| convertMicrotyper_Server | Man page Source code |
| convertMicrotyper_UI | Man page Source code |
| convertOneBruker_Server | Man page Source code |
| convertOneBruker_UI | Man page Source code |
| copyDB_dbAttach | Man page Source code |
| copyDB_dbDetach | Man page Source code |
| copyDB_setupMeta | Man page Source code |
| copyToNewDatabase | Man page Source code |
| copyingDbPopup | Man page Source code |
| createFuzzyVector | Man page Source code |
| createFuzzyVectorUnit | Man page Source code |
| createMetaSQL | Man page Source code |
| createNewSQLITEdb | Man page Source code |
| createSpectraSQL | Man page Source code |
| createXMLSQL | Man page Source code |
| current_db_version | Man page Source code |
| databaseSelector_UI | Man page Source code |
| databaseSelector_server | Man page Source code |
| databaseTabServer | Man page Source code |
| databaseTabUI | Man page Source code |
| databaseTabUIFunc | Man page Source code |
| db_from_bruker | Man page Source code |
| db_from_mzml | Man page Source code |
| decompress | Man page Source code |
| delim_to_mzml | Man page Source code |
| dendDotsServer | Man page Source code |
| dendDotsUI | Man page Source code |
| dendrogramActionsUI | Man page Source code |
| dendrogramCreator | Man page Source code |
| dendrogramCreatorUI | Man page Source code |
| deserial | Man page Source code |
| displayMissingProteinUI | Man page Source code |
| distMatrix | Man page Source code |
| double_from_raw_compressed | Man page Source code |
| downloadHier | Man page Source code |
| downloadSmNet_UI | Man page Source code |
| downloadSvg | Man page Source code |
| dropNulls | Man page Source code |
| experimentSummary_Server | Man page Source code |
| experimentSummary_UI | Man page Source code |
| exportSamples_server | Man page Source code |
| exportSamples_ui | Man page Source code |
| exportmzML | Man page Source code |
| extractBrukerAcquistionInfo | Man page Source code |
| extractHPCConstants | Man page Source code |
| findIdbacHome | Man page Source code |
| findMSconvert | Man page Source code |
| findMissingSampleMapIds | Man page Source code |
| find_mz_files | Man page Source code |
| getAttribs | Man page Source code |
| getMicrotyperFiles | Man page Source code |
| getOS | Man page Source code |
| get_subtrees | Man page Source code |
| hashR | Man page Source code |
| idbac_available_samples | Man page Source code |
| idbac_connect | Man page Source code |
| idbac_create | Man page Source code |
| idbac_db_version | Man page Source code |
| idbac_dendrogram_creator | Man page Source code |
| idbac_get_metadata | Man page Source code |
| idbac_get_peaks | Man page Source code |
| idbac_get_spectra | Man page Source code |
| idbac_update_db | Man page Source code |
| insertIntoIndividualSpectra | Man page Source code |
| insertIntoMassTable | Man page Source code |
| insertMetadataColumns | Man page Source code |
| labelsFromBrushedDendrogram | Man page Source code |
| manPageProtDend_Server | Man page Source code |
| manPageProtDend_UI | Man page Source code |
| map384Well | Man page Source code |
| merge_idbac_experiments | Man page Source code |
| microtyperTomzML | Man page Source code |
| mirrorPlot | Man page Source code |
| mirrorPlotDownload_UI | Man page Source code |
| mirrorPlotsSettings_UI | Man page Source code |
| mirrorPlots_Server | Man page Source code |
| mirrorPlots_UI | Man page Source code |
| modAppendDendLabels_WellPanel | Man page Source code |
| modDendDotsMod_WellPanel | Man page Source code |
| modDendLabels_WellPanel | Man page Source code |
| modDendLines_WellPanel | Man page Source code |
| modularityClustering | Man page Source code |
| mquant_bin | Man page Source code |
| multipleMaldiPlates | Man page Source code |
| networkFromDF | Man page Source code |
| newUpdate | Man page Source code |
| new_version_check | Man page Source code |
| normalizeSpectrumIntensity | Man page Source code |
| nulledMap384Well | Man page Source code |
| pcaCalculation | Man page Source code |
| pcoaCalculation | Man page Source code |
| peakRetentionSettings_Server | Man page Source code |
| peakRetentionSettings_UI | Man page Source code |
| plateMapUI | Man page Source code |
| platemod | Man page Source code |
| plotDendrogram | Man page Source code |
| plotHier | Man page Source code |
| plotly_3d_scatter | Man page Source code |
| poolToCon | Man page Source code |
| popup3 | Man page Source code |
| popup4 | Man page Source code |
| popupPlotTsne_UI | Man page Source code |
| popupPlotTsne_server | Man page Source code |
| popupPlot_UI | Man page Source code |
| popupPlot_server | Man page Source code |
| prioritizer | Man page Source code |
| processProteinSpectra | Man page Source code |
| processSmallMolSpectra | Man page Source code |
| processXMLIndSpectra | Man page Source code |
| proteinPeaksToMatrix | Man page Source code |
| proteoWizConvert | Man page Source code |
| readAcqusFile | Man page Source code |
| readBrukerAcqus | Man page Source code |
| retrieveAllStrainIds | Man page Source code |
| runDendDots | Man page Source code |
| run_app | Man page Source code |
| run_microtyperTomzML | Man page Source code |
| sampleChooser_UI | Man page Source code |
| sampleChooser_server | Man page Source code |
| sampleMapViewer | Man page Source code |
| sampleMaptoDF | Man page Source code |
| sanitize | Man page Source code |
| saveNetSVG | Man page Source code |
| selectDirectory_Server | Man page Source code |
| selectDirectory_UI | Man page Source code |
| selectInjections_UI | Man page Source code |
| selectInjections_server | Man page Source code |
| serial | Man page Source code |
| serializeXML | Man page Source code |
| smMANPlot_UI | Man page Source code |
| smallMolDendrogram_UI | Man page Source code |
| small_maldiquant_to_network | Man page Source code |
| smallmirrorPlotsSampleSelect_UI | Man page Source code |
| smallmirrorPlots_Server | Man page Source code |
| smallmirrorPlots_UI | Man page Source code |
| spectraProcessingFunction | Man page Source code |
| spectrumMatrixToMALDIqaunt | Man page Source code |
| sql_create_locale_table | Man page Source code |
| sql_create_massindex_table | Man page Source code |
| sql_create_metadata_table | Man page Source code |
| sql_create_spectra_table | Man page Source code |
| sql_create_version_table | Man page Source code |
| sql_create_xml_table | Man page Source code |
| sql_fill_locale_table | Man page Source code |
| sql_fill_version_table | Man page Source code |
| subtractMatrixBlank | Man page Source code |
| transferToNewDB_UI | Man page Source code |
| transferToNewDB_server | Man page Source code |
| tsneCalculation | Man page Source code |
| tsneUiPop | Man page Source code |
| ui_proteinClustering | Man page Source code |
| ui_smallMolMan | Man page Source code |
| updateCollapse | Man page Source code |
| updateMeta_UI | Man page Source code |
| updateMeta_server | Man page Source code |
| update_idbac_modal | Man page Source code |
