Description Usage Arguments Value
Collapse a sample's MALDIquant peak objects into a single peak object
1 2 | collapseReplicates(checkedPool, sampleIDs, peakPercentPresence,
lowerMassCutoff, upperMassCutoff, minSNR, tolerance = 0.002, protein)
|
checkedPool |
checked-out pool |
sampleIDs |
sample IDs of samples to process |
peakPercentPresence |
peaks in replciates that occurr less frequently than this will be removed |
lowerMassCutoff |
masses below this will be removed from analyses |
upperMassCutoff |
masses above this will be removed from analyses |
minSNR |
minimum SNR a a peak must have to be retained |
tolerance |
binning tolerance ppm / 10e6 |
protein |
whether to search SQL for protein or small mol spectra |
a single trimmed and binned MALDIquant peak object
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